Disentangling a Complex Biomolecular World with Single-Molecule Resolution

Biological systems rely on a complex and precisely controlled mix of biomolecules to sustain life as we know it. In addition to their compositional heterogeneity, individual biomolecules undergo dynamic rearrangements to fulfil their cellular function: they move, reversibly interact, and alternate between multiple conformations. Disentangling these compositional and dynamic complexities of biological systems poses a formidable challenge to established ensemble techniques. In this review, we discuss two single-molecule techniques - nanopore recordings and single-molecule Förster Resonance Energy Transfer (smFRET) measurements - and highlight their powerful abilities to unravel mixtures and resolve biomolecular dynamics with the ultimate resolution of single molecules. Applications range from identifying the vast sequence space populated by nucleic acids and stoichiometries observed in small messenger molecules, to detecting time-varying conformations and interactions of large multi-domain proteins. This non-exhaustive review aims to introduce non-expert readers to the unique benefits of single-molecule experiments, which can overcome ensemble and time averaging as well as dynamic range limitations, and therefore offer unique, quantitative descriptions of the intriguingly complex biomolecular mechanisms found within and around us.

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Publication Details

Journal
CHIMIA International Journal for Chemistry
Published
2025-11-26
DOI
https://doi.org/10.2533/chimia.2025.770
Primary Topic
Nanopore and Nanochannel Transport Studies
Type
article
Field-Weighted Citation Impact
0.00

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article

Disentangling a Complex Biomolecular World with Single-Molecule Resolution

Benjamin Vermeer, Sonja Schmid, Wenxian Tang, David Fuentenebro Navas
CHIMIA International Journal for Chemistry
Nanopore and Nanochannel Transport Studies
article

Disentangling a Complex Biomolecular World with Single-Molecule Resolution

Benjamin Vermeer, Sonja Schmid, Wenxian Tang, David Fuentenebro Navas
article en

Abstract

Biological systems rely on a complex and precisely controlled mix of biomolecules to sustain life as we know it. In addition to their compositional heterogeneity, individual biomolecules undergo dynamic rearrangements to fulfil their cellular function: they move, reversibly interact, and alternate between multiple conformations. Disentangling these compositional and dynamic complexities of biological systems poses a formidable challenge to established ensemble techniques. In this review, we discuss two single-molecule techniques - nanopore recordings and single-molecule Förster Resonance Energy Transfer (smFRET) measurements - and highlight their powerful abilities to unravel mixtures and resolve biomolecular dynamics with the ultimate resolution of single molecules. Applications range from identifying the vast sequence space populated by nucleic acids and stoichiometries observed in small messenger molecules, to detecting time-varying conformations and interactions of large multi-domain proteins. This non-exhaustive review aims to introduce non-expert readers to the unique benefits of single-molecule experiments, which can overcome ensemble and time averaging as well as dynamic range limitations, and therefore offer unique, quantitative descriptions of the intriguingly complex biomolecular mechanisms found within and around us.

CHIMIA International Journal for ChemistryVol. 79(11)
University of Basel (CH)
National Science Foundation, Universität Basel, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung, Nederlandse Organisatie voor Wetenschappelijk Onderzoek
Openalex Percentile: Top 64%
Nanopore and Nanochannel Transport Studies
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