Coriobacteriia may affect the occurrence of hepatocellular carcinoma through the pyrimidine, caffeine, urea cycle and glutamate metabolic pathways

Most patients with hepatocellular carcinoma (HCC) lose the chance of survival due to lack of timely diagnosis and effective treatment. The specific gut microbiota (GM) spectrum may become the target of early diagnosis and treatment of HCC. However, the metabolic mechanisms that affect the occurrence of liver cancer are still unclear. In this study, we called the dataset of HCC, and 1091 serum metabolites 309 metabolite ratios as well as 211 GM taxa through genome-wide association studies instrumental variables for Mendelian randomization causal association analysis and metabolome intermediary effects exploration. Through functional enrichment of intermediate metabolites, the effects of metabolic pathways involved in GM on HCC were analyzed. Inverse variance weighting was the main model for establishing causal associations. Additionally horizontal pleiotropy test, linkage-disequilibrium test and the sensitivity analysis were employed to test the explanatory power of instrumental variables (single nucleotide polymorphisms). Our study found Coriobacteriia class, Coriobacteriales order, Coriobacteriaceae family, and 4 specific genera were strongly related to HCC (P <.05). Meanwhile, through 2 samples-MR Analysis, 49 metabolites levels/ratios were shown to be closely related to the development of HCC. A total of 10 related metabolic intermediary factors have been selected, and 4 metabolic pathways of pyrimidine (P = .0031), caffeine (P = .0072), urea cycle (P = .0105) and glutamate (P = .0298) were significantly enriched in this GM related HCC process. Coriobacteriia class and its lower taxa were associated with the risk factors of developing HCC through the regulation of pyrimidine, caffeine, urea cycle and glutamate metabolic pathways. These GM taxa and metabolitesmay serve as potential targets for the diagnosis of HCC.

Authors

Institutions

Publication Details

Journal
Medicine
Published
2025-11-21
DOI
https://doi.org/10.1097/md.0000000000045663
Primary Topic
Metabolomics and Mass Spectrometry Studies
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Coriobacteriia may affect the occurrence of hepatocellular carcinoma through the pyrimidine, caffeine, urea cycle and glutamate metabolic pathways

Jingyi Dai, Qiujing Li, Zhongxu Ma, Zhijian Dong et al.
Medicine
Metabolomics and Mass Spectrometry Studies
article

Coriobacteriia may affect the occurrence of hepatocellular carcinoma through the pyrimidine, caffeine, urea cycle and glutamate metabolic pathways

Jingyi Dai, Qiujing Li, Zhongxu Ma, Zhijian Dong, Guiming Liu, Yu Luo, Jie Chen
article en

Abstract

Most patients with hepatocellular carcinoma (HCC) lose the chance of survival due to lack of timely diagnosis and effective treatment. The specific gut microbiota (GM) spectrum may become the target of early diagnosis and treatment of HCC. However, the metabolic mechanisms that affect the occurrence of liver cancer are still unclear. In this study, we called the dataset of HCC, and 1091 serum metabolites 309 metabolite ratios as well as 211 GM taxa through genome-wide association studies instrumental variables for Mendelian randomization causal association analysis and metabolome intermediary effects exploration. Through functional enrichment of intermediate metabolites, the effects of metabolic pathways involved in GM on HCC were analyzed. Inverse variance weighting was the main model for establishing causal associations. Additionally horizontal pleiotropy test, linkage-disequilibrium test and the sensitivity analysis were employed to test the explanatory power of instrumental variables (single nucleotide polymorphisms). Our study found Coriobacteriia class, Coriobacteriales order, Coriobacteriaceae family, and 4 specific genera were strongly related to HCC (P <.05). Meanwhile, through 2 samples-MR Analysis, 49 metabolites levels/ratios were shown to be closely related to the development of HCC. A total of 10 related metabolic intermediary factors have been selected, and 4 metabolic pathways of pyrimidine (P = .0031), caffeine (P = .0072), urea cycle (P = .0105) and glutamate (P = .0298) were significantly enriched in this GM related HCC process. Coriobacteriia class and its lower taxa were associated with the risk factors of developing HCC through the regulation of pyrimidine, caffeine, urea cycle and glutamate metabolic pathways. These GM taxa and metabolitesmay serve as potential targets for the diagnosis of HCC.

MedicineVol. 104(47)
Kunming Third People's Hospital (CN)
Openalex Percentile: Top 67%
Metabolomics and Mass Spectrometry Studies
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.