DEGAUSS: A Novel Softcore Force Field Using Double Exponential van der Waals and Gaussian Charge for Molecular Dynamics Simulations I: Theory and Validation

Classical molecular force fields contain singularities in Lennard-Jones and Coulombic potentials that cause numerical challenges under extreme conditions, including transition states, high temperatures and pressures, and alchemical free energy calculations. We present DEGAUSS, a singularity-free force field framework that eliminates these divergences by replacing Lennard-Jones potentials with double exponential functions and point charges with Gaussian charge distributions, ensuring that all interactions remain finite even at zero separation. Using existing classical force field parameters as a starting point, we define DEGAUSS-specific parameters that closely resemble the behaviors of the classical force field, while avoiding numerical instabilities. Validation studies of TIP3P and OPC3 water models demonstrate excellent reproduction of thermodynamic and structural properties across diverse temperature ranges. Alanine dipeptide simulations preserve major conformational states, and protein benchmarks show structural stability consistent with that of conventional force fields. Hydration free energy calculations using alchemical methods demonstrate the absence of singularities during particle annihilation without requiring additional softcore potentials while producing results comparable to classical methods. Although the smooth functional forms increase computational costs relative to standard Lennard-Jones potentials and Coulomb potentials, DEGAUSS provides a robust framework that maintains chemical accuracy and simplifies alchemical free energy calculations.

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Publication Details

Journal
Journal of Chemical Theory and Computation
Published
2025-11-14
DOI
https://doi.org/10.1021/acs.jctc.5c01324
Primary Topic
Protein Structure and Dynamics
Type
article
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article

DEGAUSS: A Novel Softcore Force Field Using Double Exponential van der Waals and Gaussian Charge for Molecular Dynamics Simulations I: Theory and Validation

Yong Duan, Ray Luo, Xiongwu Wu, Zhen Huang
Journal of Chemical Theory and Computation
Protein Structure and Dynamics
article

DEGAUSS: A Novel Softcore Force Field Using Double Exponential van der Waals and Gaussian Charge for Molecular Dynamics Simulations I: Theory and Validation

Yong Duan, Ray Luo, Xiongwu Wu, Zhen Huang
article en

Abstract

Classical molecular force fields contain singularities in Lennard-Jones and Coulombic potentials that cause numerical challenges under extreme conditions, including transition states, high temperatures and pressures, and alchemical free energy calculations. We present DEGAUSS, a singularity-free force field framework that eliminates these divergences by replacing Lennard-Jones potentials with double exponential functions and point charges with Gaussian charge distributions, ensuring that all interactions remain finite even at zero separation. Using existing classical force field parameters as a starting point, we define DEGAUSS-specific parameters that closely resemble the behaviors of the classical force field, while avoiding numerical instabilities. Validation studies of TIP3P and OPC3 water models demonstrate excellent reproduction of thermodynamic and structural properties across diverse temperature ranges. Alanine dipeptide simulations preserve major conformational states, and protein benchmarks show structural stability consistent with that of conventional force fields. Hydration free energy calculations using alchemical methods demonstrate the absence of singularities during particle annihilation without requiring additional softcore potentials while producing results comparable to classical methods. Although the smooth functional forms increase computational costs relative to standard Lennard-Jones potentials and Coulomb potentials, DEGAUSS provides a robust framework that maintains chemical accuracy and simplifies alchemical free energy calculations.

Journal of Chemical Theory and ComputationVol. 21(22)
National Institutes of Health (US), University of California System (US), National Heart, Lung, and Blood Institute (US), Division of Materials Science and Engineering (AU), Irvine University (US), New York Genome Center (US), University of California, Davis (US)
Openalex Percentile: Top 67%
Protein Structure and Dynamics
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