In silico analysis of neuroactive compound biosynthesis in probiotic Lactobacillus spp. via protein association networks

The brain regulates psychiatric behavior with the help of neuroactive compounds such as L-histidine, L-tryptophan and gamma aminobutyric acid (GABA) produced within the body. The proteins regulating the production of these neuroactive compounds were explored in probiotic Lactobacillus spp. with the help of STRING (11.5) as a bioinformatics tool. Lactobacillus plantarum WCFS1 has been selected as a model organism, while L-histidine, L-tryptophan and glutamate decarboxylase were provided as target input at https://string-db.org/ . The dataset network of histidinol dehydrogenase, tryptophan synthase subunit beta and glutamate decarboxylase has been found to be present in Lactobacillus plantarum. Further analysis revealed significant co-occurrence within other probiotic Lactobacillus species along with their association with curated pathways/complexes for the production of neuroactive amino acids. The study underlines a descriptive functional analysis of several neural compounds through the computational study using the STRING tool along with detailed attention for the molecular mechanisms related to its interaction with the human host and its potential to modify and induce other health‐related benefits. The findings also emphasizethe possibility for the use and evaluation of the studied probiotic strains as psychoactive bacteria in the treatment or prevention of mental health–related disorders.

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Publication Details

Journal
Discover Life
Published
2025-11-25
DOI
https://doi.org/10.1007/s11084-025-09714-4
Primary Topic
GABA and Rice Research
Type
article
Field-Weighted Citation Impact
0.00
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article

In silico analysis of neuroactive compound biosynthesis in probiotic Lactobacillus spp. via protein association networks

Abhijeet Singh, Rakesh Kumar Sharma, Rajat Giri
Discover Life
GABA and Rice Research
article

In silico analysis of neuroactive compound biosynthesis in probiotic Lactobacillus spp. via protein association networks

Abhijeet Singh, Rakesh Kumar Sharma, Rajat Giri
article en

Abstract

The brain regulates psychiatric behavior with the help of neuroactive compounds such as L-histidine, L-tryptophan and gamma aminobutyric acid (GABA) produced within the body. The proteins regulating the production of these neuroactive compounds were explored in probiotic Lactobacillus spp. with the help of STRING (11.5) as a bioinformatics tool. Lactobacillus plantarum WCFS1 has been selected as a model organism, while L-histidine, L-tryptophan and glutamate decarboxylase were provided as target input at https://string-db.org/ . The dataset network of histidinol dehydrogenase, tryptophan synthase subunit beta and glutamate decarboxylase has been found to be present in Lactobacillus plantarum. Further analysis revealed significant co-occurrence within other probiotic Lactobacillus species along with their association with curated pathways/complexes for the production of neuroactive amino acids. The study underlines a descriptive functional analysis of several neural compounds through the computational study using the STRING tool along with detailed attention for the molecular mechanisms related to its interaction with the human host and its potential to modify and induce other health‐related benefits. The findings also emphasizethe possibility for the use and evaluation of the studied probiotic strains as psychoactive bacteria in the treatment or prevention of mental health–related disorders.

Discover LifeVol. 55(1)
Chhatrapati Shahu Ji Maharaj University (IN), Manipal University Jaipur
Openalex Percentile: Top 73%
GABA and Rice Research
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