Microbial necromass carbon enhances arsenic methylation in paddy soils

Microbial necromass carbon (MNC) constitutes a critical component of soil organic carbon. Yet, how MNC regulates microbial arsenic (As) methylation processes in soil remains unclear. Across major Chinese rice-growing regions, bacterial and fungal necromass carbon showed significant positive correlations (<i>P</i> < 0.05) with the transcribed <i>arsM</i> gene. Soil incubation experiments with seven soils explored how straw and three types of MNC-gram-positive bacterial necromass carbon (G<sup>+</sup>-NC), gram-negative bacterial necromass carbon (G<sup>-</sup>-NC), and fungal necromass carbon (F-NC)-affect As methylation. Our results demonstrated that all types of MNC enhanced As methylation, and G<sup>-</sup>-NC exhibiting the most pronounced effect on methylated As accumulation. The addition of 10 to 60 mg G<sup>-</sup>-NC maximally increased As(III) by 43.0 to 75.9% and enhanced methylated As by 4.4- to 18.0-fold in soil porewater vs. the control. Further, metagenomic and metatranscriptomic analyses demonstrated that G<sup>-</sup>-NC addition upregulated the relative abundance of transcribed <i>arsM</i> and <i>arsC2</i> genes, which were mostly assigned to <i>Acidobacteriota</i>, <i>Pseudomonadota</i>, <i>Planctomycetota,</i> and <i>Bacteroidota</i>. Notably, the transcriptional activity of <i>arsM</i>-harboring <i>Methanosarcinales</i> and <i>Moorellales</i> was markedly enhanced at the order level. By promoting As reduction process, G<sup>-</sup>-NC provides more substrates for As methylation process in soil. Furthermore, G<sup>-</sup>-NC could be used as a carbon source for As-methylating microorganisms, stimulating the transcriptional activity of <i>arsM</i>, which has been confirmed by the incubation experiment with pure culture of <i>Paraclostridium benzoelyticum</i> TC8. This study highlights the critical role of MNC in regulating As biogeochemistry, establishing a basis for predicting the extent of As methylation and risk of rice straighthead disease in paddy ecosystems.

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Journal
Proceedings of the National Academy of Sciences
Published
2025-11-25
DOI
https://doi.org/10.1073/pnas.2527462122
Primary Topic
Arsenic contamination and mitigation
Type
article
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article

Microbial necromass carbon enhances arsenic methylation in paddy soils

Yong-Guan Zhu, Yu‐Rong Liu, Xianjin Tang, Jie Li et al.
Proceedings of the National Academy of Sciences
Arsenic contamination and mitigation
article

Microbial necromass carbon enhances arsenic methylation in paddy soils

Yong-Guan Zhu, Yu‐Rong Liu, Xianjin Tang, Jie Li, Ziyu Gao, Jianming M. Xu, Siyu Zhang, Chuan Chen
article en

Abstract

Microbial necromass carbon (MNC) constitutes a critical component of soil organic carbon. Yet, how MNC regulates microbial arsenic (As) methylation processes in soil remains unclear. Across major Chinese rice-growing regions, bacterial and fungal necromass carbon showed significant positive correlations (<i>P</i> < 0.05) with the transcribed <i>arsM</i> gene. Soil incubation experiments with seven soils explored how straw and three types of MNC-gram-positive bacterial necromass carbon (G<sup>+</sup>-NC), gram-negative bacterial necromass carbon (G<sup>-</sup>-NC), and fungal necromass carbon (F-NC)-affect As methylation. Our results demonstrated that all types of MNC enhanced As methylation, and G<sup>-</sup>-NC exhibiting the most pronounced effect on methylated As accumulation. The addition of 10 to 60 mg G<sup>-</sup>-NC maximally increased As(III) by 43.0 to 75.9% and enhanced methylated As by 4.4- to 18.0-fold in soil porewater vs. the control. Further, metagenomic and metatranscriptomic analyses demonstrated that G<sup>-</sup>-NC addition upregulated the relative abundance of transcribed <i>arsM</i> and <i>arsC2</i> genes, which were mostly assigned to <i>Acidobacteriota</i>, <i>Pseudomonadota</i>, <i>Planctomycetota,</i> and <i>Bacteroidota</i>. Notably, the transcriptional activity of <i>arsM</i>-harboring <i>Methanosarcinales</i> and <i>Moorellales</i> was markedly enhanced at the order level. By promoting As reduction process, G<sup>-</sup>-NC provides more substrates for As methylation process in soil. Furthermore, G<sup>-</sup>-NC could be used as a carbon source for As-methylating microorganisms, stimulating the transcriptional activity of <i>arsM</i>, which has been confirmed by the incubation experiment with pure culture of <i>Paraclostridium benzoelyticum</i> TC8. This study highlights the critical role of MNC in regulating As biogeochemistry, establishing a basis for predicting the extent of As methylation and risk of rice straighthead disease in paddy ecosystems.

Proceedings of the National Academy of SciencesVol. 122(48)
Nanjing Agricultural University (CN), Chinese Academy of Sciences (CN), Huazhong Agricultural University (CN), State Key Laboratory of Pollution Control and Resource Reuse (CN), ZheJiang Academy of Agricultural Sciences (CN), Research Center for Eco-Environmental Sciences (CN), Imperial College London (GB), East China Normal University (CN), Zhejiang University (CN)
Openalex Percentile: Top 68%
Arsenic contamination and mitigation
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