Comparative Evaluation of Organic and Synthetic Fertilizers on Lettuce Yield and Metabolomic Profiles

The excessive use of synthetic fertilizers in agriculture has raised environmental concerns, prompting the search for sustainable alternatives, such as organic amendments. This study evaluated the agronomic performance, nutrient use efficiency and metabolomic profiles of lettuce (Lactuca sativa L. var. baby leaf) cultivated using synthetic and organic (olive mill waste-based compost pellets and sewage sludge) in a controlled pot experiment. The treatments included three doses of inorganic fertilizer and two organic fertilizers applied at equivalent nitrogen (N) rates, alongside an unfertilized control. Soil physicochemical properties, plant biomass, nutrient uptake and metabolite profiles, including amino acids, sugars and organic acids, were analyzed. Inorganic fertilization rapidly increased soil mineral N and phosphorus (P), enhancing leaf chlorophyll, canopy development and fresh biomass, and promoting the accumulation of reducing sugars (p < 0.05). However, it reduced amino acid and phenolic levels, indicating a metabolic shift towards growth at the expense of stress and antioxidant compounds. Sewage sludge increased soil organic matter and amino acid and sucrose accumulation, but also induced stress-related metabolites. Pelletized compost maintained an intermediate level of nutrient availability, preserved phenolic compounds and improved phosphorus use efficiency. This surpassed the results achieved with sewage sludge in terms of dry matter yield, despite limited short-term growth stimulation. These findings highlight the potential of integrating moderate mineral fertilization with pelletized compost to balance immediate productivity, nutrient efficiency and long-term soil and metabolic quality in lettuce cultivation.