A reinforcement learning-based approach for dynamic privacy protection in genomic data sharing beacons

The rise of genomic sequencing raises privacy concerns due to the identifiable nature of genomic data. The GA4GH Beacon Project enables privacy-preserving data sharing but is vulnerable to membership inference attacks that reveal individual participation. Existing defenses, such as noise addition and query restrictions, rely on static policies that attackers can bypass. We introduce the first reinforcement learning (RL)-based dynamic defense for the beacon protocol, training defender and attacker agents in a multiplayer setting. Our approach adapts responses in real time, distinguishing users from adversaries and balancing privacy with utility against evolving threats.

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Publication Details

Journal
Genome biology
Published
2025-11-24
DOI
https://doi.org/10.1186/s13059-025-03871-5
Primary Topic
Privacy-Preserving Technologies in Data
Type
article
Field-Weighted Citation Impact
0.00

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A reinforcement learning-based approach for dynamic privacy protection in genomic data sharing beacons

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A reinforcement learning-based approach for dynamic privacy protection in genomic data sharing beacons

Sinem Sav, Erman Ayday, Kerem Ayöz, A. Ercüment Çiçek, Masoud Poorghaffar Aghdam, Sobhan Shukueian Tabrizi
article en

Abstract

The rise of genomic sequencing raises privacy concerns due to the identifiable nature of genomic data. The GA4GH Beacon Project enables privacy-preserving data sharing but is vulnerable to membership inference attacks that reveal individual participation. Existing defenses, such as noise addition and query restrictions, rely on static policies that attackers can bypass. We introduce the first reinforcement learning (RL)-based dynamic defense for the beacon protocol, training defender and attacker agents in a multiplayer setting. Our approach adapts responses in real time, distinguishing users from adversaries and balancing privacy with utility against evolving threats.

Genome biologyVol. 26(1)
Bilkent University (TR), Cooperative Educational Service Agencies (US), Case Western Reserve University (US)
National Institutes of Health, U.S. National Library of Medicine
Openalex Percentile: Top 81%
Privacy-Preserving Technologies in Data
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