Combination Ensemble and Explainable Deep Learning Framework for High-Accuracy Classification of Wild Edible Macrofungi

Accurate identification of wild edible macrofungi is essential for biodiversity conservation, food safety, and ecological sustainability, yet remains challenging due to the morphological similarity between edible and toxic species. In this study, a curated dataset of 24 wild edible macrofungi species was analyzed using six state-of-the-art convolutional neural networks (CNNs) and four ensemble configurations, benchmarked across eight evaluation metrics. Among individual models, EfficientNetB0 achieved the highest performance (95.55% accuracy), whereas MobileNetV3-L underperformed (90.55%). Pairwise ensembles yielded inconsistent improvements, highlighting the importance of architectural complementarity. Notably, the proposed Combination Model, integrating EfficientNetB0, ResNet50, and RegNetY through a hierarchical voting strategy, achieved the best results with 97.36% accuracy, 0.9996 AUC, and 0.9725 MCC, surpassing all other models. To enhance interpretability, explainable AI (XAI) methods Grad-CAM, Eigen-CAM, and LIME were employed, consistently revealing biologically meaningful regions and transforming the framework into a transparent decision-support tool. These findings establish a robust and scalable paradigm for fine-grained fungal classification, demonstrating that carefully engineered ensemble learning combined with XAI not only advances mycological research but also paves the way for broader applications in plant recognition, spore analysis, and large-scale vegetation monitoring from satellite imagery.

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Publication Details

Journal
Biology
Published
2025-11-22
DOI
https://doi.org/10.3390/biology14121644
Citations
1
Primary Topic
Mycorrhizal Fungi and Plant Interactions
Type
article
Field-Weighted Citation Impact
1.75
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article

Combination Ensemble and Explainable Deep Learning Framework for High-Accuracy Classification of Wild Edible Macrofungi

Fatih Ekinci, Mehmet Serdar Güzel, Seyit Kaan Güneş, İlgaz Akata et al.
1 citations
Biology
Mycorrhizal Fungi and Plant Interactions
1.75
article

Combination Ensemble and Explainable Deep Learning Framework for High-Accuracy Classification of Wild Edible Macrofungi

Fatih Ekinci, Mehmet Serdar Güzel, Seyit Kaan Güneş, İlgaz Akata, Eda Kumru, Ahmet Korkmaz, Şehmus Altaş, Ahmet Tunahan Yalçın
article en
1 citations

Abstract

Accurate identification of wild edible macrofungi is essential for biodiversity conservation, food safety, and ecological sustainability, yet remains challenging due to the morphological similarity between edible and toxic species. In this study, a curated dataset of 24 wild edible macrofungi species was analyzed using six state-of-the-art convolutional neural networks (CNNs) and four ensemble configurations, benchmarked across eight evaluation metrics. Among individual models, EfficientNetB0 achieved the highest performance (95.55% accuracy), whereas MobileNetV3-L underperformed (90.55%). Pairwise ensembles yielded inconsistent improvements, highlighting the importance of architectural complementarity. Notably, the proposed Combination Model, integrating EfficientNetB0, ResNet50, and RegNetY through a hierarchical voting strategy, achieved the best results with 97.36% accuracy, 0.9996 AUC, and 0.9725 MCC, surpassing all other models. To enhance interpretability, explainable AI (XAI) methods Grad-CAM, Eigen-CAM, and LIME were employed, consistently revealing biologically meaningful regions and transforming the framework into a transparent decision-support tool. These findings establish a robust and scalable paradigm for fine-grained fungal classification, demonstrating that carefully engineered ensemble learning combined with XAI not only advances mycological research but also paves the way for broader applications in plant recognition, spore analysis, and large-scale vegetation monitoring from satellite imagery.

BiologyVol. 14(12)
Ankara University (TR), Istanbul Kültür University (TR)
Openalex Percentile: Top 11%
Mycorrhizal Fungi and Plant Interactions
1.75
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