Xylan reducing end sequence-containing oligosaccharides function as priming acceptors for Arabidopsis and <i>Setaria viridis</i> IRX10

Xylan, one of the most abundant hemicelluloses in plant cell walls, consists of β-(1 → 4)-linked xylosyl (Xyl) residues and often contains a conserved Reducing End Sequence (RES) in dicots and gymnosperms, comprising β-d-Xylp-(1 → 3)-α-l-Rhap-(1 → 2)-α-d-GalpA-(1 → 4)-d-Xylp. This tetrasaccharide has been proposed to function as a priming module ('primer hypothesis') or a termination signal ('terminator hypothesis') in xylan biosynthesis, yet its precise biochemical role remains unclear. Here, we examined whether the RES-containing oligosaccharide with one additional Xyl residue at the non-reducing end (X-RES) acts as a priming acceptor for IRREGULAR XYLEM10 (IRX10) proteins from a dicot, Arabidopsis thaliana, and a grass, Setaria viridis. Both recombinant AtIRX10L and SvIRX10 utilized fluorescently labeled X-RES and the canonical primer Xyl5 as acceptor substrates. Time-course analyses revealed that X-RES promoted a more efficient transition of +X1 to +X2 product, i.e. with minimal accumulation of +X1 product and enhanced formation of +X2 and longer products, suggesting that the RES motif facilitates seamless elongation. Consistent with these substrate-dependent differences, docking simulations showed that X-RES and its elongated form (X2-RES) bound more stably to the predicted IRX10 active site than the corresponding linear oligosaccharides Xyl5 and Xyl6. Moreover, the ability of SvIRX10 to recognize X-RES, despite RES motif not yet being detected in grass xylan, suggests that the RES-primed elongation may represent an ancestral substrate recognition in grasses. Our findings identify a structurally unique RES-containing oligosaccharide that functions as a primer in vitro, thereby extending current understanding of acceptor substrate flexibility in xylan biosynthesis. (242 words).

Authors

Institutions

Publication Details

Journal
Plant and Cell Physiology
Published
2025-11-24
DOI
https://doi.org/10.1093/pcp/pcaf154
Primary Topic
Polysaccharides and Plant Cell Walls
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Xylan reducing end sequence-containing oligosaccharides function as priming acceptors for Arabidopsis and Setaria viridis IRX10

Mayu Sakamoto, Haruki Toda, Takeshi Ishimizu, Yasuhiko Kizuka et al.
Plant and Cell Physiology
Polysaccharides and Plant Cell Walls
article

Xylan reducing end sequence-containing oligosaccharides function as priming acceptors for Arabidopsis and Setaria viridis IRX10

Mayu Sakamoto, Haruki Toda, Takeshi Ishimizu, Yasuhiko Kizuka, Shiro Suzuki, Tadashi Ishii, Seichi Suzuki
article en

Abstract

Xylan, one of the most abundant hemicelluloses in plant cell walls, consists of β-(1 → 4)-linked xylosyl (Xyl) residues and often contains a conserved Reducing End Sequence (RES) in dicots and gymnosperms, comprising β-d-Xylp-(1 → 3)-α-l-Rhap-(1 → 2)-α-d-GalpA-(1 → 4)-d-Xylp. This tetrasaccharide has been proposed to function as a priming module ('primer hypothesis') or a termination signal ('terminator hypothesis') in xylan biosynthesis, yet its precise biochemical role remains unclear. Here, we examined whether the RES-containing oligosaccharide with one additional Xyl residue at the non-reducing end (X-RES) acts as a priming acceptor for IRREGULAR XYLEM10 (IRX10) proteins from a dicot, Arabidopsis thaliana, and a grass, Setaria viridis. Both recombinant AtIRX10L and SvIRX10 utilized fluorescently labeled X-RES and the canonical primer Xyl5 as acceptor substrates. Time-course analyses revealed that X-RES promoted a more efficient transition of +X1 to +X2 product, i.e. with minimal accumulation of +X1 product and enhanced formation of +X2 and longer products, suggesting that the RES motif facilitates seamless elongation. Consistent with these substrate-dependent differences, docking simulations showed that X-RES and its elongated form (X2-RES) bound more stably to the predicted IRX10 active site than the corresponding linear oligosaccharides Xyl5 and Xyl6. Moreover, the ability of SvIRX10 to recognize X-RES, despite RES motif not yet being detected in grass xylan, suggests that the RES-primed elongation may represent an ancestral substrate recognition in grasses. Our findings identify a structurally unique RES-containing oligosaccharide that functions as a primer in vitro, thereby extending current understanding of acceptor substrate flexibility in xylan biosynthesis. (242 words).

Plant and Cell Physiology
Ritsumeikan University (JP), University of Tsukuba (JP), Gifu University (JP)
Openalex Percentile: Top 74%
Polysaccharides and Plant Cell Walls
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.