Zero-shot generalization for predicting viral concentrations and evaluating removal efficiencies across wastewater matrices

Predicting viral particles on new unseen data across wastewater matrices (WMs) in aerobic membrane bioreactor (AeMBR)-based wastewater treatment plants (WWTPs) remains an open challenge due to the process drifts involved in the treatment stages. Efficient data augmentation approaches based on Markov chain (MCM), Markov chain and multivariate Gaussian (MMCM), Gaussian mixture (GMM) and Copula (CM) were proposed to generate synthetic data from physicochemical parameters, virometry, and PCR-based method. Dual-attention long short-term memory network (DA-LSTM) with new generative models was proposed to predict viral particles and evaluate the removal efficiencies across AeMBRs, thereby handling effluent processing drifts. The DA-LSTM combines attention mechanisms to adaptively adjust the weights of the features and increase the long-term memory, enabling accuracy and robustness across unseen WMs. DA-LSTM framework was tested for predicting pepper mild mottle virus and enteric viral pathogens such as total virus and adenovirus in two regions of Saudi Arabia. The log removal values were evaluated through the estimated viral concentrations. The DA-LSTM model demonstrated significant adaptability to unseen data across different WMs, maintaining robust performance despite the effluent drifts. The results showed that DA-LSTM zero-shot generalization achieved remarkable viral particles prediction performance using MMCM with a mean average coefficient of determination R<sup>2</sup> of 0.91, and 0.97 across the sand, and MBR wastewater matrices in region R<sup>1</sup>, respectively, and R<sup>2</sup> of 0.97 across the chlorinated effluent treatment process in region R<sup>2</sup>. Tests on total viral prediction across municipal WWTPs located in two other regions in Saudi Arabia confirmed the DA-LSTM's effectiveness in predicting viral particle across WMs and its ability to enhance zero-shot generalization performance at the regional level.

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Publication Details

Journal
Scientific Reports
Published
2025-11-24
DOI
https://doi.org/10.1038/s41598-025-26384-4
Citations
1
Primary Topic
SARS-CoV-2 detection and testing
Type
article
Field-Weighted Citation Impact
1.40

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article

Zero-shot generalization for predicting viral concentrations and evaluating removal efficiencies across wastewater matrices

Ibrahima N’Doye, Jianxu Chen, Mohammad Khalil Monjed, Pei‐Ying Hong
1 citations
Scientific Reports
SARS-CoV-2 detection and testing
1.40
article

Zero-shot generalization for predicting viral concentrations and evaluating removal efficiencies across wastewater matrices

Ibrahima N’Doye, Jianxu Chen, Mohammad Khalil Monjed, Pei‐Ying Hong
article en
1 citations

Abstract

Predicting viral particles on new unseen data across wastewater matrices (WMs) in aerobic membrane bioreactor (AeMBR)-based wastewater treatment plants (WWTPs) remains an open challenge due to the process drifts involved in the treatment stages. Efficient data augmentation approaches based on Markov chain (MCM), Markov chain and multivariate Gaussian (MMCM), Gaussian mixture (GMM) and Copula (CM) were proposed to generate synthetic data from physicochemical parameters, virometry, and PCR-based method. Dual-attention long short-term memory network (DA-LSTM) with new generative models was proposed to predict viral particles and evaluate the removal efficiencies across AeMBRs, thereby handling effluent processing drifts. The DA-LSTM combines attention mechanisms to adaptively adjust the weights of the features and increase the long-term memory, enabling accuracy and robustness across unseen WMs. DA-LSTM framework was tested for predicting pepper mild mottle virus and enteric viral pathogens such as total virus and adenovirus in two regions of Saudi Arabia. The log removal values were evaluated through the estimated viral concentrations. The DA-LSTM model demonstrated significant adaptability to unseen data across different WMs, maintaining robust performance despite the effluent drifts. The results showed that DA-LSTM zero-shot generalization achieved remarkable viral particles prediction performance using MMCM with a mean average coefficient of determination R<sup>2</sup> of 0.91, and 0.97 across the sand, and MBR wastewater matrices in region R<sup>1</sup>, respectively, and R<sup>2</sup> of 0.97 across the chlorinated effluent treatment process in region R<sup>2</sup>. Tests on total viral prediction across municipal WWTPs located in two other regions in Saudi Arabia confirmed the DA-LSTM's effectiveness in predicting viral particle across WMs and its ability to enhance zero-shot generalization performance at the regional level.

Scientific ReportsVol. 15(1)
Umm al-Qura University (SA), King Abdullah University of Science and Technology (SA)
King Abdullah University of Science and Technology
Openalex Percentile: Top 14%
SARS-CoV-2 detection and testing
1.40
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