Quantifying tree species effects on soil organic carbon using machine learning algorithm: A case study in tropical agroforestry system of gayo coffee, Indonesia

Gayo coffee based on tropical agroforestry systems in Aceh plays an ecological role in mitigating climate change and a socio-economic role as a social livelihood in Indonesia. Ecologically, coffee agroforestry systems can increase soil carbon stocks through complex vegetation that produces litter as a source of nutrients. However, studies on measuring the contribution of vegetation to soil carbon dynamics in agroforestry lands using advanced machine learning-based statistical models in Indonesia are still very rare. Therefore, this study involved 18 complex vegetation variables to prove their contribution to soil organic carbon (SOC) dynamics using machine learning-based predictions with the random forest (RF) algorithm and hyperparameter tuning settings. The SOC available in the study area reached 173.46 ± 60.34 Mg ha -1 , with 9.20% ± 3.87% organic C, in agroforestry systems characterized by vegetation density of 1752.94 ± 459.20 trees ha -1 (range: 850-2850 trees ha -1 ), and consisted of 11 overstory species. Based on two RF model tests (rf and ranger model), SOC dynamics were influenced by vegetation by 95% (R-squared) with an error rate of 0.05 (RMSE) and 0.04 (MAE). The contribution of vegetation focuses on the variable of agroforestry richness as the most important factor in predicting SOC, even though the species Leucaena leucocephala dominates around 88% of the species composition. These results recommend that increasing agroforestry species diversity is key to increasing SOC in coffee agroforestry. This information is expected to strengthen the implementation of SFA policies and enhance the sustainability of climate change mitigation-based social livelihoods in tropical Indonesia.

Authors

Institutions

Publication Details

Journal
Trees Forests and People
Published
2025-11-23
DOI
https://doi.org/10.1016/j.tfp.2025.101098
Primary Topic
Cocoa and Sweet Potato Agronomy
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Quantifying tree species effects on soil organic carbon using machine learning algorithm: A case study in tropical agroforestry system of gayo coffee, Indonesia

Yudi Setiawan, Muhammad Reza Aulia, Moh Zulfajrin, Heru Bagus Pulunggono et al.
Trees Forests and People
Cocoa and Sweet Potato Agronomy
article

Quantifying tree species effects on soil organic carbon using machine learning algorithm: A case study in tropical agroforestry system of gayo coffee, Indonesia

Yudi Setiawan, Muhammad Reza Aulia, Moh Zulfajrin, Heru Bagus Pulunggono, Dahlan Dahlan, Devi Maulida Rahmah, Adi Sutrisno, Dedi Saputra, Rika Ratna Sari, Elida Novita, Rahmat Pramulya, Rahmat Asy’Ari, Fitria Yuliasmara, Tarmizi Tarmizi, Abd Malik A Madinu, Fakhruddin Fakhruddin, Fachruddin Fachruddin, Azelia Dwi Rahmawati, Nihawa Hajar Pudjawati
article en

Abstract

Gayo coffee based on tropical agroforestry systems in Aceh plays an ecological role in mitigating climate change and a socio-economic role as a social livelihood in Indonesia. Ecologically, coffee agroforestry systems can increase soil carbon stocks through complex vegetation that produces litter as a source of nutrients. However, studies on measuring the contribution of vegetation to soil carbon dynamics in agroforestry lands using advanced machine learning-based statistical models in Indonesia are still very rare. Therefore, this study involved 18 complex vegetation variables to prove their contribution to soil organic carbon (SOC) dynamics using machine learning-based predictions with the random forest (RF) algorithm and hyperparameter tuning settings. The SOC available in the study area reached 173.46 ± 60.34 Mg ha -1 , with 9.20% ± 3.87% organic C, in agroforestry systems characterized by vegetation density of 1752.94 ± 459.20 trees ha -1 (range: 850-2850 trees ha -1 ), and consisted of 11 overstory species. Based on two RF model tests (rf and ranger model), SOC dynamics were influenced by vegetation by 95% (R-squared) with an error rate of 0.05 (RMSE) and 0.04 (MAE). The contribution of vegetation focuses on the variable of agroforestry richness as the most important factor in predicting SOC, even though the species Leucaena leucocephala dominates around 88% of the species composition. These results recommend that increasing agroforestry species diversity is key to increasing SOC in coffee agroforestry. This information is expected to strengthen the implementation of SFA policies and enhance the sustainability of climate change mitigation-based social livelihoods in tropical Indonesia.

Trees Forests and PeopleVol. 23
University of Brawijaya (ID), Universitas Syiah Kuala (ID), IPB University (ID), Universitas Jember (ID), Universitas Borneo Tarakan (ID), Universitas Muhammadiyah Aceh (ID), Universitas Teuku Umar (ID), Indonesian Coffee and Cocoa Research Institute (ID), Center for Indonesian Veterinary Analytical Studies (ID), Padjadjaran University (ID)
Openalex Percentile: Top 73%
Cocoa and Sweet Potato Agronomy
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.