Transcriptome profiling of tumor-infiltrating lymphocyte-mediated cytotoxicity against patient-derived lung cancer organoids
Non-small cell lung cancer (NSCLC) is a leading cause of cancer mortality, and therapies utilizing tumor-infiltrating lymphocytes (TILs) show significant promise. However, molecular signatures defining a productive TIL-mediated response remain poorly characterized. Here, we establish a patient-derived organoid and autologous TIL co-culture platform to show that expanded TILs mediate potent, specific cytotoxicity against NSCLC organoids. This functional response is associated with a crucial shift in T-cell states from proliferative towards effector memory phenotypes and involves activating key signaling networks, including the TNF and IL-17 pathways. Furthermore, T-cell receptor (TCR) analysis confirms the expansion process selectively enriches tumor-associated clonotypes, resulting in a more focused repertoire. This work delineates the transcriptional and clonal signatures of an effective anti-tumor immune response, providing a robust framework to guide next-generation personalized TIL therapies.
Authors
- Qumiao Xu
- Qinghua Hou (ORCID: https://orcid.org/0000-0002-3434-3429)
- Zhiyuan Qin (ORCID: https://orcid.org/0000-0003-0824-5638)
- Hongchang Zhang (ORCID: https://orcid.org/0009-0004-5829-538X)
- Xian Lin (ORCID: https://orcid.org/0000-0001-9043-2648)
- Haozhen Liu (ORCID: https://orcid.org/0009-0006-3272-9447)
- Qiao Li (ORCID: https://orcid.org/0000-0002-3869-2650)
- Zhuojue Guan
- Xiaoqiang Li (ORCID: https://orcid.org/0000-0002-9692-1458)
- Chao Chen (ORCID: https://orcid.org/0000-0003-0990-5239)
- Junhui Chen (ORCID: https://orcid.org/0000-0002-7085-0022)
- Jixian Liu (ORCID: https://orcid.org/0000-0001-6184-6905)
- Jianyi Yang (ORCID: https://orcid.org/0000-0003-2912-7737)
- Haocheng Du (ORCID: https://orcid.org/0009-0006-8137-1736)
- Yanling Li (ORCID: https://orcid.org/0009-0000-1479-7362)
Institutions
- Shenzhen University (CN)
- University of Michigan (US)
- Michigan Medicine (US)
- Peking University Shenzhen Hospital (CN)
- University of Chinese Academy of Sciences (CN)
Publication Details
- Journal
- Communications Biology
- Published
- 2025-11-23
- DOI
- https://doi.org/10.1038/s42003-025-09188-0
- Citations
- 1
- Primary Topic
- Cancer Immunotherapy and Biomarkers
- Type
- article
- Field-Weighted Citation Impact
- 1.05
Funders
- Sanming Project of Medicine in Shenzhen