Role of associated water in stabilizing human γ‐D crystallin under crowded eye lens conditions

The cytoplasm of a cell is inherently crowded with diverse biological macromolecules of varying sizes, which significantly influence thermodynamics and kinetics of essential processes such as protein folding, molecular association, and enzymatic reactions. Similarly, human eye lens is densely packed with crystallin proteins of different sizes, including multimers, oligomers and monomers, creating a highly crowded and concentrated environment. In this study, we explored the effects of poly ethylene glycol (PEG) of varying molecular weights and sizes (PEG-400, PEG-2k, PEG-6k, PEG-35k, and PEG-100k) on stability of HγDC. A uniform crowder concentration of 100 gL<sup>-1</sup> was maintained in all cases to mimic lens-like crowding conditions. Unfolding experiments were performed at 5 μM HγDC in 50 mM phosphate buffer (pH 7.4) using CD spectroscopy in the absence and presence of the crowders, monitoring ellipticity at 218 nm at a scan rate of 1 K/min. Our results revealed that crowders facilitate the thermal unfolding of HγDC, with the destabilizing effect increasing as the crowder size increases. Thermodynamic analysis showed that small crowders destabilize the protein primarily through enthalpic interactions, counterbalanced to some extent by entropic stabilization ( <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"> <mml:semantics> <mml:mrow> <mml:msup><mml:mrow><mml:mo>∆</mml:mo> <mml:mo>∆</mml:mo></mml:mrow> <mml:mo>#</mml:mo></mml:msup> <mml:mi>G</mml:mi> <mml:mo>=</mml:mo> <mml:msup><mml:mrow><mml:mo>∆</mml:mo> <mml:mo>∆</mml:mo></mml:mrow> <mml:mo>#</mml:mo></mml:msup> <mml:mi>H</mml:mi> <mml:mo>-</mml:mo> <mml:mi>T</mml:mi> <mml:mo>∆</mml:mo> <mml:msup><mml:mo>∆</mml:mo> <mml:mo>#</mml:mo></mml:msup> <mml:mi>S</mml:mi></mml:mrow> <mml:annotation>$$ {\Delta \Delta }^{\#}G={\Delta \Delta }^{\#}H-T\Delta {\Delta }^{\#}S $$</mml:annotation></mml:semantics> </mml:math> ). In contrast, larger crowders (PEG-35k, PEG-100k) destabilize the protein almost entirely through entropic contributions, contradicting classical excluded volume theory. To rationalize these findings, we employed the associated water stabilization mechanism hypothesis, highlighting the role of associated water. Overall, our study emphasizes pivotal role of biological water in modulating protein stability, providing mechanistic insight into size-dependent crowding effects in human eye lens.

Authors

Institutions

Publication Details

Journal
Protein Science
Published
2025-11-22
DOI
https://doi.org/10.1002/pro.70393
Citations
1
Primary Topic
Connexins and lens biology
Type
article
Field-Weighted Citation Impact
0.81
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Role of associated water in stabilizing human γ‐D crystallin under crowded eye lens conditions

Ajay P.S. Rana, Shreya Ghosh, Pratik Sen, B. R. Singh et al.
1 citations
Protein Science
Connexins and lens biology
0.81
article

Role of associated water in stabilizing human γ‐D crystallin under crowded eye lens conditions

Ajay P.S. Rana, Shreya Ghosh, Pratik Sen, B. R. Singh, Harshit Karnwal
article en
1 citations

Abstract

The cytoplasm of a cell is inherently crowded with diverse biological macromolecules of varying sizes, which significantly influence thermodynamics and kinetics of essential processes such as protein folding, molecular association, and enzymatic reactions. Similarly, human eye lens is densely packed with crystallin proteins of different sizes, including multimers, oligomers and monomers, creating a highly crowded and concentrated environment. In this study, we explored the effects of poly ethylene glycol (PEG) of varying molecular weights and sizes (PEG-400, PEG-2k, PEG-6k, PEG-35k, and PEG-100k) on stability of HγDC. A uniform crowder concentration of 100 gL<sup>-1</sup> was maintained in all cases to mimic lens-like crowding conditions. Unfolding experiments were performed at 5 μM HγDC in 50 mM phosphate buffer (pH 7.4) using CD spectroscopy in the absence and presence of the crowders, monitoring ellipticity at 218 nm at a scan rate of 1 K/min. Our results revealed that crowders facilitate the thermal unfolding of HγDC, with the destabilizing effect increasing as the crowder size increases. Thermodynamic analysis showed that small crowders destabilize the protein primarily through enthalpic interactions, counterbalanced to some extent by entropic stabilization ( <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"> <mml:semantics> <mml:mrow> <mml:msup><mml:mrow><mml:mo>∆</mml:mo> <mml:mo>∆</mml:mo></mml:mrow> <mml:mo>#</mml:mo></mml:msup> <mml:mi>G</mml:mi> <mml:mo>=</mml:mo> <mml:msup><mml:mrow><mml:mo>∆</mml:mo> <mml:mo>∆</mml:mo></mml:mrow> <mml:mo>#</mml:mo></mml:msup> <mml:mi>H</mml:mi> <mml:mo>-</mml:mo> <mml:mi>T</mml:mi> <mml:mo>∆</mml:mo> <mml:msup><mml:mo>∆</mml:mo> <mml:mo>#</mml:mo></mml:msup> <mml:mi>S</mml:mi></mml:mrow> <mml:annotation>$$ {\Delta \Delta }^{\#}G={\Delta \Delta }^{\#}H-T\Delta {\Delta }^{\#}S $$</mml:annotation></mml:semantics> </mml:math> ). In contrast, larger crowders (PEG-35k, PEG-100k) destabilize the protein almost entirely through entropic contributions, contradicting classical excluded volume theory. To rationalize these findings, we employed the associated water stabilization mechanism hypothesis, highlighting the role of associated water. Overall, our study emphasizes pivotal role of biological water in modulating protein stability, providing mechanistic insight into size-dependent crowding effects in human eye lens.

Protein ScienceVol. 34(12)
Indian Institute of Technology Kanpur (IN)
Openalex Percentile: Top 21%
Connexins and lens biology
0.81
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.