A machine-learning powered liquid biopsy predicts response to paclitaxel plus ramucirumab in advanced gastric cancer: results from the prospective IVY trial

Paclitaxel plus ramucirumab (PTX + RAM) is a widely used second-line treatment for advanced gastric cancer, yet no validated biomarkers exist to predict therapeutic response. Identifying non-invasive predictors could enable patient stratification and optimize outcomes. We conducted a prospective observational multicenter study (IVY trial; NCT06490055) enrolling 115 patients with advanced gastric cancer treated with PTX + RAM. Serum was collected prior to the initiation of treatment. Small RNA sequencing identified differentially expressed exosomal microRNAs (exo-miRNAs) in patients with controlled disease versus those with progressive disease. Machine learning and logistic regression were employed to construct a predictive model, which was subsequently validated using quantitative real-time polymerase chain reaction (qRT-PCR) in the entire cohort. Ten candidate exo-miRNAs were initially discovered, and a five-miRNA panel (miR-10a-5p, miR-25-5p, miR-125a-5p, miR-139-5p, and miR-450a-5p) was selected via stepwise elimination. This 5-exo-miRNA model achieved high accuracy in distinguishing controlled disease patients from progressive disease patients (AUC = 0.84). When combined with body mass index (BMI), the composite model (EXEMPLAR) demonstrated enhanced predictive performance (AUC = 0.87). High-risk patients exhibited significantly shorter progression-free survival (PFS: median, 1.9 vs. 4.2 months, p = 0.019) and overall survival (OS: median, 1.1 vs. 1.7 years, p < 0.001). Decision curve analysis confirmed the clinical benefit of the model. A nomogram was developed to facilitate personalized risk assessment. This study identifies and validates a novel 5-exo-miRNA panel for predicting response to second-line PTX plus RAM therapy in gastric cancer. The combined exosomal signature and BMI risk model provides a clinically applicable, non-invasive tool for personalized treatment selection.

Authors

Institutions

Publication Details

Journal
Molecular Cancer
Published
2025-11-22
DOI
https://doi.org/10.1186/s12943-025-02526-0
Primary Topic
Gastric Cancer Management and Outcomes
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

A machine-learning powered liquid biopsy predicts response to paclitaxel plus ramucirumab in advanced gastric cancer: results from the prospective IVY trial

Katsutoshi Shoda, Ajay Kumar Goel, Daisuke Ichikawa, Takeshi Nagasaka et al.
Molecular Cancer
Gastric Cancer Management and Outcomes
article

A machine-learning powered liquid biopsy predicts response to paclitaxel plus ramucirumab in advanced gastric cancer: results from the prospective IVY trial

Katsutoshi Shoda, Ajay Kumar Goel, Daisuke Ichikawa, Takeshi Nagasaka, Caiming Xu
article en

Abstract

Paclitaxel plus ramucirumab (PTX + RAM) is a widely used second-line treatment for advanced gastric cancer, yet no validated biomarkers exist to predict therapeutic response. Identifying non-invasive predictors could enable patient stratification and optimize outcomes. We conducted a prospective observational multicenter study (IVY trial; NCT06490055) enrolling 115 patients with advanced gastric cancer treated with PTX + RAM. Serum was collected prior to the initiation of treatment. Small RNA sequencing identified differentially expressed exosomal microRNAs (exo-miRNAs) in patients with controlled disease versus those with progressive disease. Machine learning and logistic regression were employed to construct a predictive model, which was subsequently validated using quantitative real-time polymerase chain reaction (qRT-PCR) in the entire cohort. Ten candidate exo-miRNAs were initially discovered, and a five-miRNA panel (miR-10a-5p, miR-25-5p, miR-125a-5p, miR-139-5p, and miR-450a-5p) was selected via stepwise elimination. This 5-exo-miRNA model achieved high accuracy in distinguishing controlled disease patients from progressive disease patients (AUC = 0.84). When combined with body mass index (BMI), the composite model (EXEMPLAR) demonstrated enhanced predictive performance (AUC = 0.87). High-risk patients exhibited significantly shorter progression-free survival (PFS: median, 1.9 vs. 4.2 months, p = 0.019) and overall survival (OS: median, 1.1 vs. 1.7 years, p < 0.001). Decision curve analysis confirmed the clinical benefit of the model. A nomogram was developed to facilitate personalized risk assessment. This study identifies and validates a novel 5-exo-miRNA panel for predicting response to second-line PTX plus RAM therapy in gastric cancer. The combined exosomal signature and BMI risk model provides a clinically applicable, non-invasive tool for personalized treatment selection.

Molecular CancerVol. 25(1)
Kawasaki Medical School (JP), Dalian Medical University (CN), City of Hope (US), First Affiliated Hospital of Dalian Medical University (CN), Beckman Research Institute, University of Yamanashi (JP)
Openalex Percentile: Top 49%
Gastric Cancer Management and Outcomes
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.