Benchmarking methods for measuring biosynthetic gene cluster similarity and determination of gene cluster families
Scripts and data required to reproduce the results are available at https://github.com/aswalker-lab/BGC-clustering-benchmark and processed similarity, clusters, and scaffolds are also available at https://huggingface.co/datasets/allie-walker/BGC-clustering-benchmark. Code is also available at Zenodo: 10.5281/zenodo.17373546.
Authors
- Abiodun S. Oyedele (ORCID: https://orcid.org/0000-0001-9528-5288)
- Allison S. Walker (ORCID: https://orcid.org/0000-0001-5666-7232)
Institutions
- Vanderbilt University (US)
- Vanderbilt University Medical Center (US)
Publication Details
- Journal
- Bioinformatics
- Published
- 2025-11-21
- DOI
- https://doi.org/10.1093/bioinformatics/btaf636
- Primary Topic
- Bioinformatics and Genomic Networks
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- Vanderbilt University
- National Institutes of Health
- National Institute of General Medical Sciences