Title:BayesMetaNMA: An Interactive R/Shiny Application for Bayesian Pairwise and Network Meta-Analysis

<ns3:p>Background Bayesian methods provide a flexible framework for meta-analysis, particularly for network meta-analysis (NMA), which enables simultaneous comparison of multiple interventions and robust modeling of heterogeneity. However, implementing Bayesian meta-analysis often requires advanced programming skills. Methods We developed BayesMetaNMA, an open-source R/Shiny application for Bayesian pairwise and network meta-analyses. The application uses rjags for Markov Chain Monte Carlo (MCMC) estimation, netmeta for network structure visualization and frequentist NMA outputs, and meta for conventional pairwise analyses. Users can select from various effect measures (standardized mean difference, mean difference, odds ratio, risk ratio, hazard ratio), set MCMC parameters, and define prior distributions. Outputs include MCMC diagnostics, posterior summaries, study-level estimates, and network-specific analyses such as ranking tables and inconsistency checks. Results BayesMetaNMA produces comprehensive outputs for both pairwise and network models, including convergence diagnostics (trace, density, autocorrelation, Gelman–Rubin plots), pooled and treatment-specific effects, heterogeneity estimates, and optional meta-regression. All plots and summaries are downloadable. Conclusions BayesMetaNMA provides a user-friendly interface for applying Bayesian methods to evidence synthesis without extensive coding. By integrating established R packages in an interactive workflow, it facilitates robust Bayesian analyses for a wide range of research applications.</ns3:p>

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Publication Details

Journal
F1000Research
Published
2025-09-15
DOI
https://doi.org/10.12688/f1000research.169341.1
Primary Topic
Meta-analysis and systematic reviews
Type
article
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article

Title:BayesMetaNMA: An Interactive R/Shiny Application for Bayesian Pairwise and Network Meta-Analysis

Mahmood Ahmad, Laiba Khan, Mohammad Omer Faruk Khan, Joanne Lac
F1000Research
Meta-analysis and systematic reviews
article

Title:BayesMetaNMA: An Interactive R/Shiny Application for Bayesian Pairwise and Network Meta-Analysis

Mahmood Ahmad, Laiba Khan, Mohammad Omer Faruk Khan, Joanne Lac
article en

Abstract

<ns3:p>Background Bayesian methods provide a flexible framework for meta-analysis, particularly for network meta-analysis (NMA), which enables simultaneous comparison of multiple interventions and robust modeling of heterogeneity. However, implementing Bayesian meta-analysis often requires advanced programming skills. Methods We developed BayesMetaNMA, an open-source R/Shiny application for Bayesian pairwise and network meta-analyses. The application uses rjags for Markov Chain Monte Carlo (MCMC) estimation, netmeta for network structure visualization and frequentist NMA outputs, and meta for conventional pairwise analyses. Users can select from various effect measures (standardized mean difference, mean difference, odds ratio, risk ratio, hazard ratio), set MCMC parameters, and define prior distributions. Outputs include MCMC diagnostics, posterior summaries, study-level estimates, and network-specific analyses such as ranking tables and inconsistency checks. Results BayesMetaNMA produces comprehensive outputs for both pairwise and network models, including convergence diagnostics (trace, density, autocorrelation, Gelman–Rubin plots), pooled and treatment-specific effects, heterogeneity estimates, and optional meta-regression. All plots and summaries are downloadable. Conclusions BayesMetaNMA provides a user-friendly interface for applying Bayesian methods to evidence synthesis without extensive coding. By integrating established R packages in an interactive workflow, it facilitates robust Bayesian analyses for a wide range of research applications.</ns3:p>

F1000ResearchVol. 14
Royal Free London NHS Foundation Trust (GB), University College London (GB)
Openalex Percentile: Top 65%
Meta-analysis and systematic reviews
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Title:BayesMetaNMA: An Interactive R/Shiny Application for Bayesian Pairwise and Network Meta-Analysis — Mahmood Ahmad, Laiba Khan, et al. · F1000Research (2025) | TGRS Research Map | TGRS