Multi-pathogen respiratory surveillance in western China: Synchronized circulation patterns and predictive modeling

Respiratory pathogen dynamics in western China following COVID-19 restrictions remain poorly characterized. We analyzed 50,247 specimens across 14 pathogens from January 2020-December 2024 using multiplex PCR at Sichuan Provincial People's Hospital. Pathogen positivity is increased by 314% post-pandemic, with H1N1 showing 1,826% and <i>Mycoplasma pneumoniae</i> showing 519% increases. Human rhinovirus exhibited highest overall detection at 9.05%. Correlation analysis revealed 89% of pathogen pairs showed positive temporal associations, contrasting with typical competitive endemic patterns. School-aged children experienced disproportionate burden, with <i>M. pneumoniae</i> reaching 30.0% positivity versus 9.1% in younger children. Seasonal autoregressive integrated moving average (SARIMA) forecasting models achieved 15.2%-24.8% mean absolute percentage errors, enabling 12-month predictions. Winter months concentrated six pathogen peaks. These findings demonstrate synchronized multi-pathogen resurgence following prolonged control measures, supporting integrated surveillance approaches monitoring pathogen interactions alongside individual dynamics for enhanced epidemic preparedness.

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Journal
iScience
Published
2025-11-20
DOI
https://doi.org/10.1016/j.isci.2025.114114
Primary Topic
Respiratory viral infections research
Type
article
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Multi-pathogen respiratory surveillance in western China: Synchronized circulation patterns and predictive modeling

Yi Huang, Yong Jing, Yusong Liu, Lyurong Liu et al.
iScience
Respiratory viral infections research
article

Multi-pathogen respiratory surveillance in western China: Synchronized circulation patterns and predictive modeling

Yi Huang, Yong Jing, Yusong Liu, Lyurong Liu, Jiaqiang Wang, Jialing Zhong
article en

Abstract

Respiratory pathogen dynamics in western China following COVID-19 restrictions remain poorly characterized. We analyzed 50,247 specimens across 14 pathogens from January 2020-December 2024 using multiplex PCR at Sichuan Provincial People's Hospital. Pathogen positivity is increased by 314% post-pandemic, with H1N1 showing 1,826% and <i>Mycoplasma pneumoniae</i> showing 519% increases. Human rhinovirus exhibited highest overall detection at 9.05%. Correlation analysis revealed 89% of pathogen pairs showed positive temporal associations, contrasting with typical competitive endemic patterns. School-aged children experienced disproportionate burden, with <i>M. pneumoniae</i> reaching 30.0% positivity versus 9.1% in younger children. Seasonal autoregressive integrated moving average (SARIMA) forecasting models achieved 15.2%-24.8% mean absolute percentage errors, enabling 12-month predictions. Winter months concentrated six pathogen peaks. These findings demonstrate synchronized multi-pathogen resurgence following prolonged control measures, supporting integrated surveillance approaches monitoring pathogen interactions alongside individual dynamics for enhanced epidemic preparedness.

iScienceVol. 28(12)
University of Electronic Science and Technology of China (CN), Fourth People's Hospital of Sichuan Province (CN), Sichuan Academy of Medical Sciences & Sichuan Provincial People's Hospital (CN), Sichuan Provincial Hospital of Traditional Chinese Medicine (CN)
Openalex Percentile: Top 54%
Respiratory viral infections research
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Multi-pathogen respiratory surveillance in western China: Synchronized circulation patterns and predictive modeling — Yi Huang, Yong Jing, et al. · iScience (2025) | TGRS Research Map | TGRS