Whole-genome sequence analysis of cefiderocol-resistant E. coli and Klebsiella pneumoniae isolates from cefiderocol treatment-naïve patients

Cefiderocol (FDC) is regarded as a reserved therapeutic option for serious CRE infections. In an earlier study, we had reported a 9.9 % FDC resistance in CRE isolates. In the present study, we are reporting the whole genome sequencing analysis findings of two FDC-resistant CRE (One E. coli and one K. pneumoniae). PBP3 insertions and mutations in the siderophore receptor cirA were the primary drivers of FDC resistance in E. coli. In K. pneumoniae, there was intact porin and a single copy of bla<sub>NDM-5</sub>, and a combination of β-lactamase and carbapenem resistance genes, including bla<sub>TEM- 1B</sub>, bla<sub>CTX-M-15,</sub>bla<sub>NDM-5</sub> and bla<sub>OXA-181</sub>.

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Publication Details

Journal
Indian Journal of Medical Microbiology
Published
2025-11-20
DOI
https://doi.org/10.1016/j.ijmmb.2025.101025
Primary Topic
Antibiotic Resistance in Bacteria
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article
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article

Whole-genome sequence analysis of cefiderocol-resistant E. coli and Klebsiella pneumoniae isolates from cefiderocol treatment-naïve patients

Bijayini Behera, Naveen Kumar Devanga Ragupathi, Gayatree Nayak
Indian Journal of Medical Microbiology
Antibiotic Resistance in Bacteria
article

Whole-genome sequence analysis of cefiderocol-resistant E. coli and Klebsiella pneumoniae isolates from cefiderocol treatment-naïve patients

Bijayini Behera, Naveen Kumar Devanga Ragupathi, Gayatree Nayak
article en

Abstract

Cefiderocol (FDC) is regarded as a reserved therapeutic option for serious CRE infections. In an earlier study, we had reported a 9.9 % FDC resistance in CRE isolates. In the present study, we are reporting the whole genome sequencing analysis findings of two FDC-resistant CRE (One E. coli and one K. pneumoniae). PBP3 insertions and mutations in the siderophore receptor cirA were the primary drivers of FDC resistance in E. coli. In K. pneumoniae, there was intact porin and a single copy of bla<sub>NDM-5</sub>, and a combination of β-lactamase and carbapenem resistance genes, including bla<sub>TEM- 1B</sub>, bla<sub>CTX-M-15,</sub>bla<sub>NDM-5</sub> and bla<sub>OXA-181</sub>.

Indian Journal of Medical MicrobiologyVol. 59
All India Institute of Medical Sciences Bhubaneswar (IN)
Openalex Percentile: Top 70%
Antibiotic Resistance in Bacteria
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