Cleanifier: contamination removal from microbial sequences using spaced seeds of a human pangenome index
Cleanifier is available via gitlab (https://gitlab.com/rahmannlab/cleanifier), PyPi (https://pypi.org/project/cleanifier/), and Bioconda (https://anaconda.org/bioconda/cleanifier). The pre-computed human pangenome index is available at Zenodo (https://doi.org/10.5281/zenodo.15639519).
Authors
- Jens Zentgraf (ORCID: https://orcid.org/0000-0001-9444-2755)
- Johanna Elena Schmitz (ORCID: https://orcid.org/0009-0002-6377-2561)
- Sven Rahmann (ORCID: https://orcid.org/0000-0002-8536-6065)
Institutions
- Hochschule für Technik und Wirtschaft des Saarlandes (DE)
- Saarland University (DE)
Publication Details
- Journal
- Bioinformatics
- Published
- 2025-11-16
- DOI
- https://doi.org/10.1093/bioinformatics/btaf632
- Citations
- 1
- Primary Topic
- Cell Image Analysis Techniques
- Type
- article
- Field-Weighted Citation Impact
- 1.63