An easy and reproducible method for rapid tissue macroarray block construction

Tissue macroarrays (Macro-TA), with 3-6 mm tissue cores, are an alternative to Tissue Microarrays for small case cohorts, enhanced area selection, and spatial transcriptomics. Still, Macro-TA construction methods are time-consuming and have orientation challenges. We present a method for fast Macro-TA construction ensuring precise tissue orientation. Donor paraffin blocks matching HE slides were arranged using a layout for case identification. A punch biopsy was used to both perforate a sponge used as a scaffold and to extract tissue cores from donor paraffin blocks. Tissue cores were sequentially inserted into the sponge holes following the layout. Depending on the punch diameter, Macro-TAs contained 9 to 48 cores. Each Macro-TA block was constructed in 4 to 25 min. This is a new, fast, easy, and reproducible method for Macro-TA construction without specialized instrumentation. It reduces 10× the processing time, ensuring proper sample orientation and being easy to implement for diagnostic and research pathology purposes.

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Publication Details

Journal
Archiv für Pathologische Anatomie und Physiologie und für Klinische Medicin
Published
2025-11-20
DOI
https://doi.org/10.1007/s00428-025-04326-9
Primary Topic
Gene expression and cancer classification
Type
article
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article

An easy and reproducible method for rapid tissue macroarray block construction

Míriam Cuatrecasas, Sandra López‐Prades, Ibán Aldecoa, Gabriela Caballero
Archiv für Pathologische Anatomie und Physiologie und für Klinische Medicin
Gene expression and cancer classification
article

An easy and reproducible method for rapid tissue macroarray block construction

Míriam Cuatrecasas, Sandra López‐Prades, Ibán Aldecoa, Gabriela Caballero
article en

Abstract

Tissue macroarrays (Macro-TA), with 3-6 mm tissue cores, are an alternative to Tissue Microarrays for small case cohorts, enhanced area selection, and spatial transcriptomics. Still, Macro-TA construction methods are time-consuming and have orientation challenges. We present a method for fast Macro-TA construction ensuring precise tissue orientation. Donor paraffin blocks matching HE slides were arranged using a layout for case identification. A punch biopsy was used to both perforate a sponge used as a scaffold and to extract tissue cores from donor paraffin blocks. Tissue cores were sequentially inserted into the sponge holes following the layout. Depending on the punch diameter, Macro-TAs contained 9 to 48 cores. Each Macro-TA block was constructed in 4 to 25 min. This is a new, fast, easy, and reproducible method for Macro-TA construction without specialized instrumentation. It reduces 10× the processing time, ensuring proper sample orientation and being easy to implement for diagnostic and research pathology purposes.

Archiv für Pathologische Anatomie und Physiologie und für Klinische Medicin
TD Bank (US), Hospital Clínic de Barcelona (ES), Institut d'Investigacions Biomèdiques de Barcelona (ES), Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (ES), Consorci Institut D'Investigacions Biomediques August Pi I Sunyer (ES), Universitat de Barcelona (ES)
Openalex Percentile: Top 69%
Gene expression and cancer classification
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An easy and reproducible method for rapid tissue macroarray block construction — Míriam Cuatrecasas, Sandra López‐Prades, et al. · Archiv für Pathologische Anatomie und Physiologie und für Klinische Medicin (2025) | TGRS Research Map | TGRS