FroM Superstring to Indexing: a space-efficient index for unconstrained <i>k</i> -mer sets using the Masked Burrows-Wheeler Transform (MBWT)
FMSI is developed in C++ and released under the MIT license, with source code provided at https://github.com/OndrejSladky/fmsi and an installable package available through Bioconda. The datasets used in the experiments are deposited at Zenodo (https://doi.org/10.5281/zenodo.14722244).
Authors
- Pavel Veselý (ORCID: https://orcid.org/0000-0003-1169-7934)
- Karel Břinda (ORCID: https://orcid.org/0000-0003-0200-557X)
- Ondřej Sladký (ORCID: https://orcid.org/0000-0002-7465-8222)
Institutions
- Institut national de recherche en sciences et technologies du numérique (FR)
- Charles University (CZ)
- Institut de Recherche en Informatique et Systèmes Aléatoires (FR)
- ETH Zurich (CH)
- Université de Rennes (FR)
Publication Details
- Journal
- Bioinformatics Advances
- Published
- 2025-11-11
- DOI
- https://doi.org/10.1093/bioadv/vbaf290
- Citations
- 1
- Primary Topic
- Algorithms and Data Compression
- Type
- article
- Field-Weighted Citation Impact
- 2.48
Funders
- Univerzita Karlova v Praze
- Agence Nationale de la Recherche
- Grantová Agentura České Republiky
- Ministère de l'Europe et des Affaires Étrangères