Physiological and transcriptomic responses of Sargassum hemiphyllum var. chinense to ocean acidification and nitrogen enrichment

Sargassum hemiphyllum var. chinense is a major brown macroalga and has important ecological and economic significance. Ocean acidification and nitrogen enrichment are serious threats to marine ecosystems primarily by altering the physiology of organisms. However, the response of S. hemiphyllum var. chinense to the combined effects of ocean acidification and elevated nitrogen levels remains unclear. This study conducted a 7-day dual-factor experiment to investigate the physiological and transcriptional responses of S. hemiphyllum var. chinense under two CO₂ levels (400 μatm and 1000 μatm) and two NO₃^⁻ levels (50 μmol/L and 300 μmol/L). The results showed that high CO₂ and NO₃^- concentrations promoted the synthesis of photosynthetic pigments including qN and NPQ. Physiological results showed that high CO₂ and the combined high NO₃^- and CO₂ treatments enhanced growth rate and NO₃^- uptake rate, but NR activity was significantly decreased. Transcriptome analysis identified differentially expressed genes involved in oxidative phosphorylation, carbon metabolism, the TCA cycle, and nitrogen metabolic pathways. Notably, genes related to oxidative phosphorylation and TCA cycle were significantly up-regulated under high NO₃^- and dual-factor treatments, suggesting that carbohydrate metabolism and energy metabolism of S. hemiphyllum var. chinense were significantly enhanced. The qRT-PCR analysis revealed that the expression levels of key genes involved in carbon fixation and nitrogen metabolism, including PFK, PRK, GAPDH, Rubisco, NR, and MDH, were significantly downregulated. These findings elucidate the molecular mechanisms by which S. hemiphyllum var. chinense adapts to ocean acidification and nitrogen enrichment, offering valuable insights for understanding its capacity to withstand changing marine environments.