An update to reflimR: strengthening transparent reference interval verification

Abstract Objectives There are currently two publicly available R packages for the indirect determination of reference intervals: reflimR and refineR. We aimed to optimize the reflimR algorithm to achieve greater concordance with refineR, including in challenging data sets. Methods We modified the truncation algorithm of the three-stage reflimR method so that the approximation to the central 95 % of the presumably non-pathological values is performed consecutively in five steps rather than all at once. Results Using the livertests dataset included in the reflimR package as an example, we demonstrate that our refined approach can effectively handle datasets containing a substantial proportion of pathological values near the reference limit. The results are more robust and coincide better with the refineR results. Conclusions The updated reflimR version 1.1.0 is available on CRAN (Comprehensive R Archive Network) and delivers reliable results in an extremely short time with moderate requirements for the number of cases.

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Publication Details

Journal
Journal of Laboratory Medicine
Published
2025-11-13
DOI
https://doi.org/10.1515/labmed-2025-0232
Primary Topic
Sepsis Diagnosis and Treatment
Type
article
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article

An update to reflimR: strengthening transparent reference interval verification

Inga Trulson, Georg Hoffmann, Sandra Klawitter
Journal of Laboratory Medicine
Sepsis Diagnosis and Treatment
article

An update to reflimR: strengthening transparent reference interval verification

Inga Trulson, Georg Hoffmann, Sandra Klawitter
article en

Abstract

Abstract Objectives There are currently two publicly available R packages for the indirect determination of reference intervals: reflimR and refineR. We aimed to optimize the reflimR algorithm to achieve greater concordance with refineR, including in challenging data sets. Methods We modified the truncation algorithm of the three-stage reflimR method so that the approximation to the central 95 % of the presumably non-pathological values is performed consecutively in five steps rather than all at once. Results Using the livertests dataset included in the reflimR package as an example, we demonstrate that our refined approach can effectively handle datasets containing a substantial proportion of pathological values near the reference limit. The results are more robust and coincide better with the refineR results. Conclusions The updated reflimR version 1.1.0 is available on CRAN (Comprehensive R Archive Network) and delivers reliable results in an extremely short time with moderate requirements for the number of cases.

Journal of Laboratory MedicineVol. 49(6)
Ostfalia University of Applied Sciences (DE), Deutsches Herzzentrum München (DE)
Openalex Percentile: Top 55%
Sepsis Diagnosis and Treatment
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An update to reflimR: strengthening transparent reference interval verification — Inga Trulson, Georg Hoffmann, et al. · Journal of Laboratory Medicine (2025) | TGRS Research Map | TGRS