Bridging single cells to organs: Mesoscale modules as fundamental units of tissue function

Recent studies at molecular and genomic scales have enriched our understanding of life's most fundamental building block: the cell. However, bridging the gap between single-cell phenotypes and the emergent functions of tissues and organs remains a formidable challenge. Here, we suggest that the conceptual span from cells to tissues and organs is so large as to warrant intermediate stepping stones. Drawing inspiration from "network motifs"-discrete units of cell-level function that emerge from the interactions of a handful of genes or enzymes-we argue that similarly identifiable units of tissue-level function, which we term "mesoscale modules," emerge from coordinated "interactions" among relatively small numbers of cells and their extracellular milieu. We outline several such modules and propose that a concerted effort to study them will deepen our foundational understanding of tissue and organ functions. By developing these mesoscale insights, we anticipate a more tractable and mechanistic approach to complex human conditions rooted in tissue- and organ-scale dysregulation, including developmental defects, cancer, cardiovascular disease, immune-related disorders, infectious disease, and aging.

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Publication Details

Journal
Cell
Published
2025-11-01
DOI
https://doi.org/10.1016/j.cell.2025.10.012
Citations
5
Primary Topic
Single-cell and spatial transcriptomics
Type
article
Field-Weighted Citation Impact
4.03
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article

Bridging single cells to organs: Mesoscale modules as fundamental units of tissue function

Rajan P. Kulkarni, Arthur D. Lander, Jeremy E. Purvis, Ginger Hunter et al.
5 citations
Cell
Single-cell and spatial transcriptomics
4.03
article

Bridging single cells to organs: Mesoscale modules as fundamental units of tissue function

Rajan P. Kulkarni, Arthur D. Lander, Jeremy E. Purvis, Ginger Hunter, Pedro R. Löwenstein, Ronald N. Germain, Harikesh S. Wong, Yun Chen
article en
5 citations

Abstract

Recent studies at molecular and genomic scales have enriched our understanding of life's most fundamental building block: the cell. However, bridging the gap between single-cell phenotypes and the emergent functions of tissues and organs remains a formidable challenge. Here, we suggest that the conceptual span from cells to tissues and organs is so large as to warrant intermediate stepping stones. Drawing inspiration from "network motifs"-discrete units of cell-level function that emerge from the interactions of a handful of genes or enzymes-we argue that similarly identifiable units of tissue-level function, which we term "mesoscale modules," emerge from coordinated "interactions" among relatively small numbers of cells and their extracellular milieu. We outline several such modules and propose that a concerted effort to study them will deepen our foundational understanding of tissue and organ functions. By developing these mesoscale insights, we anticipate a more tractable and mechanistic approach to complex human conditions rooted in tissue- and organ-scale dysregulation, including developmental defects, cancer, cardiovascular disease, immune-related disorders, infectious disease, and aging.

CellVol. 188(23)
University of North Carolina at Chapel Hill (US), Howard University (US)
Openalex Percentile: Top 6%
Single-cell and spatial transcriptomics
4.03
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Bridging single cells to organs: Mesoscale modules as fundamental units of tissue function — Rajan P. Kulkarni, Arthur D. Lander, et al. · Cell (2025) | TGRS Research Map | TGRS