Enrichment isolation and metabolic characteristics of <i>Halobacteriovorax</i> , cosmopolitan obligate predators in marine conditions
<i>Bdellovibrionota,</i> ubiquitous obligate predators regulating microbial ecosystems, suffer from cultivability limitations with only 12 known isolates despite >1,120 genomes. We developed a prey-addition enrichment system and isolated 33 marine <i>Halobacteriovorax</i> strains from sediments that fall into four species, three of which are candidate novel species. Genomic analyses revealed streamlined metabolism with auxotrophy for amino acid/hypoxanthine synthesis, enhanced chemotaxis, and specialized carbohydrate-active enzymes (e.g., GH23 hydrolases), defining adaptations for obligate predation. Predation assays demonstrated broad activity against aquaculture pathogens (<i>Vibrionaceae</i>/<i>Alteromonadales</i>), optimal at 10² predator:prey ratios. In simulated seawater, isolates achieved a 3-log reduction of <i>Vibrio alginolyticus</i> within 10 hours, highlighting potent biocontrol utility. This work bridges cultivability gaps via ecological strategies, advancing evolutionary insights into predation mechanisms while positioning <i>Bdellovibrionota</i> as precision biocontrol agents for sustainable aquaculture disease management.IMPORTANCEThis study resolves the paradox of <i>Bdellovibrionota</i>'s ubiquitous genomic presence versus cultivability scarcity by developing a prey-driven enrichment strategy that isolates 33 marine <i>Halobacteriovorax</i>. Their streamlined genomes unveil obligate predation adaptations: auxotrophy for amino acid/hypoxanthine synthesis, enhanced chemotaxis systems, and GH23 peptidoglycan hydrolases, illuminating evolutionary trajectories distinct from other predators. Crucially, <i>Halobacteriovorax</i> achieves rapid biocontrol, reducing the aquaculture pathogen <i>Vibrio alginolyticus</i> by 3 log within 10 hours under marine conditions, outperforming phages in oligotrophic environments. <i>Bdellovibrionota</i> shapes the environment by regulating microbial community structures and maintaining ecological balance in ecosystems. Additionally, they hold great promise for being developed as biological agents to replace antibiotics, offering a viable solution for the prevention and control of vibrio diseases in marine aquaculture.
Authors
- Yu-Qi Ye (ORCID: https://orcid.org/0009-0006-6521-2006)
- Zong‐Jun Du (ORCID: https://orcid.org/0000-0002-7886-5667)
- Qian Yu (ORCID: https://orcid.org/0009-0006-3997-4867)
- Fengqing Wang (ORCID: https://orcid.org/0000-0002-1594-7083)
- Zhenxing Xu (ORCID: https://orcid.org/0000-0002-6210-5348)
- De‐Chen Lu (ORCID: https://orcid.org/0000-0002-0487-5520)
- Zi-Yang Zhou (ORCID: https://orcid.org/0009-0002-6052-3471)
Institutions
- Shandong University (CN)
- Max Planck Institute for Marine Microbiology (DE)
- Weihai Science and Technology Bureau (CN)
- College of Marin (US)
Publication Details
- Journal
- Applied and Environmental Microbiology
- Published
- 2025-11-12
- DOI
- https://doi.org/10.1128/aem.01935-25
- Primary Topic
- Vibrio bacteria research studies
- Type
- article
- Field-Weighted Citation Impact
- 0.00