Enrichment isolation and metabolic characteristics of <i>Halobacteriovorax</i> , cosmopolitan obligate predators in marine conditions

<i>Bdellovibrionota,</i> ubiquitous obligate predators regulating microbial ecosystems, suffer from cultivability limitations with only 12 known isolates despite >1,120 genomes. We developed a prey-addition enrichment system and isolated 33 marine <i>Halobacteriovorax</i> strains from sediments that fall into four species, three of which are candidate novel species. Genomic analyses revealed streamlined metabolism with auxotrophy for amino acid/hypoxanthine synthesis, enhanced chemotaxis, and specialized carbohydrate-active enzymes (e.g., GH23 hydrolases), defining adaptations for obligate predation. Predation assays demonstrated broad activity against aquaculture pathogens (<i>Vibrionaceae</i>/<i>Alteromonadales</i>), optimal at 10² predator:prey ratios. In simulated seawater, isolates achieved a 3-log reduction of <i>Vibrio alginolyticus</i> within 10 hours, highlighting potent biocontrol utility. This work bridges cultivability gaps via ecological strategies, advancing evolutionary insights into predation mechanisms while positioning <i>Bdellovibrionota</i> as precision biocontrol agents for sustainable aquaculture disease management.IMPORTANCEThis study resolves the paradox of <i>Bdellovibrionota</i>'s ubiquitous genomic presence versus cultivability scarcity by developing a prey-driven enrichment strategy that isolates 33 marine <i>Halobacteriovorax</i>. Their streamlined genomes unveil obligate predation adaptations: auxotrophy for amino acid/hypoxanthine synthesis, enhanced chemotaxis systems, and GH23 peptidoglycan hydrolases, illuminating evolutionary trajectories distinct from other predators. Crucially, <i>Halobacteriovorax</i> achieves rapid biocontrol, reducing the aquaculture pathogen <i>Vibrio alginolyticus</i> by 3 log within 10 hours under marine conditions, outperforming phages in oligotrophic environments. <i>Bdellovibrionota</i> shapes the environment by regulating microbial community structures and maintaining ecological balance in ecosystems. Additionally, they hold great promise for being developed as biological agents to replace antibiotics, offering a viable solution for the prevention and control of vibrio diseases in marine aquaculture.

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Journal
Applied and Environmental Microbiology
Published
2025-11-12
DOI
https://doi.org/10.1128/aem.01935-25
Primary Topic
Vibrio bacteria research studies
Type
article
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article

Enrichment isolation and metabolic characteristics of Halobacteriovorax , cosmopolitan obligate predators in marine conditions

Yu-Qi Ye, Zong‐Jun Du, Qian Yu, Fengqing Wang et al.
Applied and Environmental Microbiology
Vibrio bacteria research studies
article

Enrichment isolation and metabolic characteristics of Halobacteriovorax , cosmopolitan obligate predators in marine conditions

Yu-Qi Ye, Zong‐Jun Du, Qian Yu, Fengqing Wang, Zhenxing Xu, De‐Chen Lu, Zi-Yang Zhou
article en

Abstract

<i>Bdellovibrionota,</i> ubiquitous obligate predators regulating microbial ecosystems, suffer from cultivability limitations with only 12 known isolates despite >1,120 genomes. We developed a prey-addition enrichment system and isolated 33 marine <i>Halobacteriovorax</i> strains from sediments that fall into four species, three of which are candidate novel species. Genomic analyses revealed streamlined metabolism with auxotrophy for amino acid/hypoxanthine synthesis, enhanced chemotaxis, and specialized carbohydrate-active enzymes (e.g., GH23 hydrolases), defining adaptations for obligate predation. Predation assays demonstrated broad activity against aquaculture pathogens (<i>Vibrionaceae</i>/<i>Alteromonadales</i>), optimal at 10² predator:prey ratios. In simulated seawater, isolates achieved a 3-log reduction of <i>Vibrio alginolyticus</i> within 10 hours, highlighting potent biocontrol utility. This work bridges cultivability gaps via ecological strategies, advancing evolutionary insights into predation mechanisms while positioning <i>Bdellovibrionota</i> as precision biocontrol agents for sustainable aquaculture disease management.IMPORTANCEThis study resolves the paradox of <i>Bdellovibrionota</i>'s ubiquitous genomic presence versus cultivability scarcity by developing a prey-driven enrichment strategy that isolates 33 marine <i>Halobacteriovorax</i>. Their streamlined genomes unveil obligate predation adaptations: auxotrophy for amino acid/hypoxanthine synthesis, enhanced chemotaxis systems, and GH23 peptidoglycan hydrolases, illuminating evolutionary trajectories distinct from other predators. Crucially, <i>Halobacteriovorax</i> achieves rapid biocontrol, reducing the aquaculture pathogen <i>Vibrio alginolyticus</i> by 3 log within 10 hours under marine conditions, outperforming phages in oligotrophic environments. <i>Bdellovibrionota</i> shapes the environment by regulating microbial community structures and maintaining ecological balance in ecosystems. Additionally, they hold great promise for being developed as biological agents to replace antibiotics, offering a viable solution for the prevention and control of vibrio diseases in marine aquaculture.

Applied and Environmental MicrobiologyVol. 91(12)
Shandong University (CN), Max Planck Institute for Marine Microbiology (DE), Weihai Science and Technology Bureau (CN), College of Marin (US)
Openalex Percentile: Top 70%
Vibrio bacteria research studies
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