Hypoxia-Induced m6A modification via YTHDF2 stabilizes PFKL to fuel MDSC Glycolysis and hepatocellular carcinoma progression

Hepatocellular carcinoma (HCC) progression is driven by cancer stem cells (CSCs) with self-renewal and immune evasion capacities. Here, we identify a novel HIF-1α/YTHDF2/PFKL axis that orchestrates metabolic reprogramming in myeloid-derived suppressor cells (MDSCs) to sustain CSC malignancy. Bioinformatics and TCGA analyses revealed HIF-1α and YTHDF2 overexpression correlated with poor HCC prognosis. Mechanistically, HIF-1α binds the YTHDF2 promoter under hypoxia, activating its transcription (validated by ChIP and luciferase assays). YTHDF2, an m6A "reader," stabilizes PFKL mRNA-a glycolytic rate-limiting enzyme-by recognizing m6A sites (predicted by SRAMP, confirmed via MeRIP/RIP). Functional assays demonstrated that YTHDF2 knockdown reduced PFKL expression, suppressed MDSC glycolysis (decreased ECAR, lactate/ATP production), and attenuated CD8⁺T cell inhibition. Conversely, YTHDF2 overexpression amplified these effects. In vitro, HIF-1α-silenced MDSCs impaired CSC spherogenesis and PD-L1 expression, rescued by PFKL overexpression. In vivo, HIF-1α knockdown inhibited tumor growth and CD8⁺T cell infiltration, while PFKL restoration reversed these phenotypes. Our study unveils HIF-1α-driven m6A modification as a critical link between MDSC metabolism and CSC immune evasion, proposing the HIF-1α/YTHDF2/PFKL axis as a therapeutic target for HCC.

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Journal
Functional & Integrative Genomics
Published
2025-11-13
DOI
https://doi.org/10.1007/s10142-025-01743-6
Primary Topic
RNA modifications and cancer
Type
article
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article

Hypoxia-Induced m6A modification via YTHDF2 stabilizes PFKL to fuel MDSC Glycolysis and hepatocellular carcinoma progression

Cheng Yang, Ziqi Guo, Fuguo Yan, Linyan Shen et al.
Functional & Integrative Genomics
RNA modifications and cancer
article

Hypoxia-Induced m6A modification via YTHDF2 stabilizes PFKL to fuel MDSC Glycolysis and hepatocellular carcinoma progression

Cheng Yang, Ziqi Guo, Fuguo Yan, Linyan Shen, Yuying Huang, Xiaoling Dong
article en

Abstract

Hepatocellular carcinoma (HCC) progression is driven by cancer stem cells (CSCs) with self-renewal and immune evasion capacities. Here, we identify a novel HIF-1α/YTHDF2/PFKL axis that orchestrates metabolic reprogramming in myeloid-derived suppressor cells (MDSCs) to sustain CSC malignancy. Bioinformatics and TCGA analyses revealed HIF-1α and YTHDF2 overexpression correlated with poor HCC prognosis. Mechanistically, HIF-1α binds the YTHDF2 promoter under hypoxia, activating its transcription (validated by ChIP and luciferase assays). YTHDF2, an m6A "reader," stabilizes PFKL mRNA-a glycolytic rate-limiting enzyme-by recognizing m6A sites (predicted by SRAMP, confirmed via MeRIP/RIP). Functional assays demonstrated that YTHDF2 knockdown reduced PFKL expression, suppressed MDSC glycolysis (decreased ECAR, lactate/ATP production), and attenuated CD8⁺T cell inhibition. Conversely, YTHDF2 overexpression amplified these effects. In vitro, HIF-1α-silenced MDSCs impaired CSC spherogenesis and PD-L1 expression, rescued by PFKL overexpression. In vivo, HIF-1α knockdown inhibited tumor growth and CD8⁺T cell infiltration, while PFKL restoration reversed these phenotypes. Our study unveils HIF-1α-driven m6A modification as a critical link between MDSC metabolism and CSC immune evasion, proposing the HIF-1α/YTHDF2/PFKL axis as a therapeutic target for HCC.

Functional & Integrative GenomicsVol. 25(1)
Guangxi Normal University (CN), Integrated Chinese Medicine (China) (HK), Affiliated Hospital of Guilin Medical College (CN)
Openalex Percentile: Top 70%
RNA modifications and cancer
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Hypoxia-Induced m6A modification via YTHDF2 stabilizes PFKL to fuel MDSC Glycolysis and hepatocellular carcinoma progression — Cheng Yang, Ziqi Guo, et al. · Functional & Integrative Genomics (2025) | TGRS Research Map | TGRS