Rhizospheric and Endophytic Plant Growth-Promoting Bacteria Associated with Coffea arabica L. and Coffea canephora Pierre ex Froehner: A Review of Their Agronomic Potential

Plant growth-promoting bacteria (PGPB) associated with <i>Coffea arabica</i> L. and <i>Coffea canephora</i> Pierre ex Froehner offer a viable strategy to reduce synthetic inputs and enhance resilience in coffee agroecosystems. This review synthesizes evidence from the past decade on rhizosphere-associated and endophytic taxa, their plant growth-promotion and biocontrol mechanisms and the resulting agronomic outcomes. A compartment-specific core microbiome is reported, in the rhizosphere of both hosts, in which <i>Bacillus</i> and <i>Pseudomonas</i> consistently dominate. Within endophytic communities, <i>Bacillus</i> predominates across tissues (roots, leaves and seeds), whereas accompanying genera are host- and tissue-specific. In <i>C. arabica</i>, endophytes frequently include <i>Pseudomonas</i> in roots and leaves. In <i>C. canephora</i>, root endophytes recurrently include <i>Burkholderia</i>, <i>Kitasatospora</i> and <i>Rahnella</i>, while seed endophytes are enriched for <i>Curtobacterium</i>. Functionally, coffee-associated PGPB solubilize phosphate; fix atmospheric nitrogen via biological nitrogen fixation; produce auxins; synthesize siderophores; and express 1-aminocyclopropane-1-carboxylate deaminase. Indirect benefits include the production of antifungal and nematicidal metabolites, secretion of hydrolytic enzymes and elicitation of induced systemic resistance. Under greenhouse conditions, inoculation with PGPB commonly improves germination, shoot and root biomass, nutrient uptake and tolerance to drought or nutrient limitation. Notable biocontrol activity against fungal phytopathogens and plant-parasitic nematodes has also been documented. Key priorities for translation to practice should include (i) multi-site, multi-season field trials to quantify performance, persistence and economic returns; (ii) strain-resolved omics to link taxa to functions expressed within the plant host; (iii) improved bioformulations compatible with farm management and (iv) rationally designed consortia aligned with production goals and biosafety frameworks.

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Journal
Microorganisms
Published
2025-11-11
DOI
https://doi.org/10.3390/microorganisms13112567
Primary Topic
Plant-Microbe Interactions and Immunity
Type
article
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article

Rhizospheric and Endophytic Plant Growth-Promoting Bacteria Associated with Coffea arabica L. and Coffea canephora Pierre ex Froehner: A Review of Their Agronomic Potential

Teodulfo Aquino-Bolaños, Arcelia Toledo-López, Angélica Bautista‐Cruz, Miriam Ramírez-López
Microorganisms
Plant-Microbe Interactions and Immunity
article

Rhizospheric and Endophytic Plant Growth-Promoting Bacteria Associated with Coffea arabica L. and Coffea canephora Pierre ex Froehner: A Review of Their Agronomic Potential

Teodulfo Aquino-Bolaños, Arcelia Toledo-López, Angélica Bautista‐Cruz, Miriam Ramírez-López
article en

Abstract

Plant growth-promoting bacteria (PGPB) associated with <i>Coffea arabica</i> L. and <i>Coffea canephora</i> Pierre ex Froehner offer a viable strategy to reduce synthetic inputs and enhance resilience in coffee agroecosystems. This review synthesizes evidence from the past decade on rhizosphere-associated and endophytic taxa, their plant growth-promotion and biocontrol mechanisms and the resulting agronomic outcomes. A compartment-specific core microbiome is reported, in the rhizosphere of both hosts, in which <i>Bacillus</i> and <i>Pseudomonas</i> consistently dominate. Within endophytic communities, <i>Bacillus</i> predominates across tissues (roots, leaves and seeds), whereas accompanying genera are host- and tissue-specific. In <i>C. arabica</i>, endophytes frequently include <i>Pseudomonas</i> in roots and leaves. In <i>C. canephora</i>, root endophytes recurrently include <i>Burkholderia</i>, <i>Kitasatospora</i> and <i>Rahnella</i>, while seed endophytes are enriched for <i>Curtobacterium</i>. Functionally, coffee-associated PGPB solubilize phosphate; fix atmospheric nitrogen via biological nitrogen fixation; produce auxins; synthesize siderophores; and express 1-aminocyclopropane-1-carboxylate deaminase. Indirect benefits include the production of antifungal and nematicidal metabolites, secretion of hydrolytic enzymes and elicitation of induced systemic resistance. Under greenhouse conditions, inoculation with PGPB commonly improves germination, shoot and root biomass, nutrient uptake and tolerance to drought or nutrient limitation. Notable biocontrol activity against fungal phytopathogens and plant-parasitic nematodes has also been documented. Key priorities for translation to practice should include (i) multi-site, multi-season field trials to quantify performance, persistence and economic returns; (ii) strain-resolved omics to link taxa to functions expressed within the plant host; (iii) improved bioformulations compatible with farm management and (iv) rationally designed consortia aligned with production goals and biosafety frameworks.

MicroorganismsVol. 13(11)
Instituto Tecnológico de Oaxaca (MX), Instituto Politécnico Nacional (MX)
Openalex Percentile: Top 75%
Plant-Microbe Interactions and Immunity
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