Characterisation of Plasmid-Associated Antimicrobial Resistance Genes in Coastal Marine Enterobacterales from the Central Adriatic Sea: De Novo Assembly and Bioinformatic Profiling

This study examines the genomic composition and resistance potential of eight putative plasmid-derived contig assemblies reconstructed from marine <i>Enterobacterales</i> isolated in the central Adriatic Sea. Using a combination of Illumina-based whole genome sequencing, de novo assembly, and a multi-tool bioinformatics pipeline, we annotated antimicrobial resistance genes (ARGs), insertion sequences (ISs), and plasmid replicon types. Clinically significant resistance markers such as <i>bla</i><sub>KPC</sub>, <i>bla</i><sub>TEM</sub>, <i>aacA4</i>, <i>tetA</i>, and <i>folP</i> were identified, frequently co-localised with mobile genetic elements including IS110, IS4, and IS1182. The plasmid-associated contigs were assigned to MOBP and MOBQ types and contained replicon markers (IncP6, IncA/C2) characteristic of broad-host-range plasmids. Our findings provide valuable insight into the plasmidome of environmental <i>Enterobacterales</i>, emphasising the role of coastal pollution in shaping the distribution and potential mobility of antimicrobial resistance genes. This supports the One Health framework by linking environmental reservoirs to clinically relevant resistance mechanisms.

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Publication Details

Journal
International Journal of Molecular Sciences
Published
2025-11-11
DOI
https://doi.org/10.3390/ijms262210910
Primary Topic
Pharmaceutical and Antibiotic Environmental Impacts
Type
article
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article

Characterisation of Plasmid-Associated Antimicrobial Resistance Genes in Coastal Marine Enterobacterales from the Central Adriatic Sea: De Novo Assembly and Bioinformatic Profiling

Slaven Jozić, Ivica Šamanić, Nikolina Udiković‐Kolić, Marin Ordulj et al.
International Journal of Molecular Sciences
Pharmaceutical and Antibiotic Environmental Impacts
article

Characterisation of Plasmid-Associated Antimicrobial Resistance Genes in Coastal Marine Enterobacterales from the Central Adriatic Sea: De Novo Assembly and Bioinformatic Profiling

Slaven Jozić, Ivica Šamanić, Nikolina Udiković‐Kolić, Marin Ordulj, Ana Maravić, Mia Dželalija, Hrvoje Kalinić, Ema Bellulovich
article en

Abstract

This study examines the genomic composition and resistance potential of eight putative plasmid-derived contig assemblies reconstructed from marine <i>Enterobacterales</i> isolated in the central Adriatic Sea. Using a combination of Illumina-based whole genome sequencing, de novo assembly, and a multi-tool bioinformatics pipeline, we annotated antimicrobial resistance genes (ARGs), insertion sequences (ISs), and plasmid replicon types. Clinically significant resistance markers such as <i>bla</i><sub>KPC</sub>, <i>bla</i><sub>TEM</sub>, <i>aacA4</i>, <i>tetA</i>, and <i>folP</i> were identified, frequently co-localised with mobile genetic elements including IS110, IS4, and IS1182. The plasmid-associated contigs were assigned to MOBP and MOBQ types and contained replicon markers (IncP6, IncA/C2) characteristic of broad-host-range plasmids. Our findings provide valuable insight into the plasmidome of environmental <i>Enterobacterales</i>, emphasising the role of coastal pollution in shaping the distribution and potential mobility of antimicrobial resistance genes. This supports the One Health framework by linking environmental reservoirs to clinically relevant resistance mechanisms.

International Journal of Molecular SciencesVol. 26(22)
University of Rijeka (HR), Ruđer Bošković Institute (HR), Institute of Oceanography and Fisheries (HR), University of Split (HR)
Openalex Percentile: Top 73%
Pharmaceutical and Antibiotic Environmental Impacts
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