From Single-Cell and Bulk Transcriptomic Integration to Functional Verification: Triaptosis-Associated lncRNA Signature Predicts Survival and Guides Therapy in Hepatocellular Carcinoma

<b>Background:</b> Hepatocellular carcinoma (HCC) continues to be a major cause of cancer associated deaths worldwide, highlighting the need for new prognostic biomarkers and treatment strategies. Triaptosis, a recently characterized mode of regulated cell death, has shown potential as a therapeutic target in various malignancies, including HCC. Nevertheless, how long non-coding RNAs (lncRNAs) regulate triaptosis, as well as their function in HCC, is still not well understood. <b>Methods:</b> This study integrates bioinformatics and functional validation to delineate the interplay between lncRNAs and triaptosis in HCC progression. <b>Results:</b> Firstly, we confirm that pharmacologically inducing triaptosis, a process centrally mediated by ROS accumulation, with menadione sodium bisulfite (MSB) can inhibit HCC growth both in vitro and in vivo. Furthermore, single-cell RNA sequencing identifies a specific elevation of the triaptosis-related gene <i>MTM1</i> in malignant hepatocytes. Through systematic bioinformatics analysis of TCGA data, we develop a 5-lncRNA prognostic signature (<i>LINC01134</i>, <i>HPN-AS1</i>, <i>DDX11-AS1</i>, <i>AC009283.1</i>, <i>AC009005.1</i>) with superior predictive power over conventional clinical parameters. Strikingly, functional studies reveal that <i>LINC01134</i> acts as a crucial oncogenic driver and its depletion suppresses proliferation, migration, and invasion while sensitizing cells to triaptosis via <i>MTM1</i>-mediated PI(3)P catabolism. <b>Conclusions:</b> Collectively, our study confirms that triaptosis is a therapeutically targetable signaling in HCC and proposes <i>LINC01134</i> as a biomarker and therapeutic target, offering new insights into lncRNA-mediated regulation of cell death for precision oncology.

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Journal
Pharmaceuticals
Published
2025-11-07
DOI
https://doi.org/10.3390/ph18111691
Primary Topic
Cancer-related molecular mechanisms research
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article
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article

From Single-Cell and Bulk Transcriptomic Integration to Functional Verification: Triaptosis-Associated lncRNA Signature Predicts Survival and Guides Therapy in Hepatocellular Carcinoma

Ziyun Zhuang, Duguang Li, Jiaxi Cheng, Zhaoqi Shi et al.
Pharmaceuticals
Cancer-related molecular mechanisms research
article

From Single-Cell and Bulk Transcriptomic Integration to Functional Verification: Triaptosis-Associated lncRNA Signature Predicts Survival and Guides Therapy in Hepatocellular Carcinoma

Ziyun Zhuang, Duguang Li, Jiaxi Cheng, Zhaoqi Shi, Yujie Li, Xiaolong Liu, Jing Yang, Hui Lin, Xiaoxiao Fan
article en

Abstract

<b>Background:</b> Hepatocellular carcinoma (HCC) continues to be a major cause of cancer associated deaths worldwide, highlighting the need for new prognostic biomarkers and treatment strategies. Triaptosis, a recently characterized mode of regulated cell death, has shown potential as a therapeutic target in various malignancies, including HCC. Nevertheless, how long non-coding RNAs (lncRNAs) regulate triaptosis, as well as their function in HCC, is still not well understood. <b>Methods:</b> This study integrates bioinformatics and functional validation to delineate the interplay between lncRNAs and triaptosis in HCC progression. <b>Results:</b> Firstly, we confirm that pharmacologically inducing triaptosis, a process centrally mediated by ROS accumulation, with menadione sodium bisulfite (MSB) can inhibit HCC growth both in vitro and in vivo. Furthermore, single-cell RNA sequencing identifies a specific elevation of the triaptosis-related gene <i>MTM1</i> in malignant hepatocytes. Through systematic bioinformatics analysis of TCGA data, we develop a 5-lncRNA prognostic signature (<i>LINC01134</i>, <i>HPN-AS1</i>, <i>DDX11-AS1</i>, <i>AC009283.1</i>, <i>AC009005.1</i>) with superior predictive power over conventional clinical parameters. Strikingly, functional studies reveal that <i>LINC01134</i> acts as a crucial oncogenic driver and its depletion suppresses proliferation, migration, and invasion while sensitizing cells to triaptosis via <i>MTM1</i>-mediated PI(3)P catabolism. <b>Conclusions:</b> Collectively, our study confirms that triaptosis is a therapeutically targetable signaling in HCC and proposes <i>LINC01134</i> as a biomarker and therapeutic target, offering new insights into lncRNA-mediated regulation of cell death for precision oncology.

PharmaceuticalsVol. 18(11)
Sir Run Run Shaw Hospital (CN), Shantou University (CN), Shantou University Medical College (CN), Zhejiang University (CN)
Openalex Percentile: Top 59%
Cancer-related molecular mechanisms research
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