Annotated 3D Point Cloud Dataset of Broad-Leaf Legumes Captured by High-Throughput Phenotyping Platform
This data descriptor presents novel, annotated 3D point cloud plant scans generated by a high-throughput phenotyping platform (LeasyScan, ICRISAT, India). It focuses on broad-leaf legume species (mungbean, common bean, cowpea, and lima bean). The dataset, generated by PlantEye(R) F600 technology, captures multispectral 3D scans of plant canopies. It includes 223 scans, providing detailed organ-level segmentation annotations for embryonic leaves, leaves, petioles, stems, and whole plants. The dataset fills a critical gap in plant phenomics research by offering a base of annotated data to support AI model development efforts in 3D computer vision. Data preprocessing, annotation procedures, and potential applications in crop research disciplines are further discussed. The dataset, preprocessing code, annotations, and a MIAPPE-compliant data sheet are also presented via the GitHub repository for further updates and expansion.
Authors
- András Tóth (ORCID: https://orcid.org/0000-0001-6098-3262)
- Pavel Šimek (ORCID: https://orcid.org/0000-0001-9244-1476)
- S Prokopova
- Michal Stočes (ORCID: https://orcid.org/0000-0001-7128-1071)
- Jan Masner (ORCID: https://orcid.org/0000-0003-4593-2306)
- Serkan Kartal (ORCID: https://orcid.org/0000-0001-9801-8986)
- Jana Kholová (ORCID: https://orcid.org/0000-0001-7133-1382)
- R. Fiala
- Alexander Galba (ORCID: https://orcid.org/0000-0002-5926-0785)
- Vojtěch Mikeš (ORCID: https://orcid.org/0009-0006-6456-056X)
- Thorsten Karrer
Institutions
- Czech University of Life Sciences Prague (CZ)
- St.Jans Gasthuis Weert (NL)
- International Crops Research Institute for the Semi-Arid Tropics (IN)
- Cukurova University (TR)
Publication Details
- Journal
- Scientific Data
- Published
- 2025-11-10
- DOI
- https://doi.org/10.1038/s41597-025-06049-7
- Citations
- 1
- Primary Topic
- Smart Agriculture and AI
- Type
- article
- Field-Weighted Citation Impact
- 1.75
Funders
- Česká Zemědělská Univerzita v Praze
- Ministerstvo Zemědělství
- Provozně Ekonomická Fakulta, Česká Zemědělská Univerzita v Praze