Editor's Choice GlycoEnzDB: a database of enzymes involved in human glycosylation

The glycan distribution on cells is governed by the activities of different families of enzymes that are together called "glycoEnzymes." These include ~400 gene products or 2% of the proteome, that have recently been curated in an ontology called GlycoEnzOnto. With the goal of making this ontology more accessible to the larger biomedical and biotechnology community, we organized a web resource called GlycoEnzDB, presenting this enzyme classification in terms of enzyme function, the pathways that they participate in and their EC numbers. This information is linked to i) Figures from the "Essentials of Glycobiology" textbook, ii) General gene, enzyme and pathway data appearing in external databases, iii) Manual and generative-artificial intelligence (AI) based text describing the function and pathways regulated by these entities, iv) Single-cell expression data across cell lines, normal human cell-types and tissue, and v) CRISPR-knockout/activation/inactivation and Transcription factor activity predictions. Whereas these data are curated for human glycoEnzymes, the knowledge framework may be extended to other species also. The user-friendly web interface is accessible at www.virtualglycome.org/glycoenzdb.

Authors

Institutions

Publication Details

Journal
Glycobiology
Published
2025-11-06
DOI
https://doi.org/10.1093/glycob/cwaf074
Primary Topic
Glycosylation and Glycoproteins Research
Type
article
Field-Weighted Citation Impact
0.00

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Editor's Choice GlycoEnzDB: a database of enzymes involved in human glycosylation

Shriramprasad Venkatesan, S. Sriram, Sriram Neelamegham, Rudiyanto Gunawan et al.
Glycobiology
Glycosylation and Glycoproteins Research
article

Editor's Choice GlycoEnzDB: a database of enzymes involved in human glycosylation

Shriramprasad Venkatesan, S. Sriram, Sriram Neelamegham, Rudiyanto Gunawan, Eliane Sobczak, Yusen Zhou, Vishnu Ghosh, Srirangaraj Setlur
article en

Abstract

The glycan distribution on cells is governed by the activities of different families of enzymes that are together called "glycoEnzymes." These include ~400 gene products or 2% of the proteome, that have recently been curated in an ontology called GlycoEnzOnto. With the goal of making this ontology more accessible to the larger biomedical and biotechnology community, we organized a web resource called GlycoEnzDB, presenting this enzyme classification in terms of enzyme function, the pathways that they participate in and their EC numbers. This information is linked to i) Figures from the "Essentials of Glycobiology" textbook, ii) General gene, enzyme and pathway data appearing in external databases, iii) Manual and generative-artificial intelligence (AI) based text describing the function and pathways regulated by these entities, iv) Single-cell expression data across cell lines, normal human cell-types and tissue, and v) CRISPR-knockout/activation/inactivation and Transcription factor activity predictions. Whereas these data are curated for human glycoEnzymes, the knowledge framework may be extended to other species also. The user-friendly web interface is accessible at www.virtualglycome.org/glycoenzdb.

GlycobiologyVol. 35(12)
Buffalo State University (US), University at Buffalo, State University of New York (US)
State University of New York, National Institutes of Health
Openalex Percentile: Top 70%
Glycosylation and Glycoproteins Research
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.