Investigating Electron Conductivity Regimes in the Bacterial Cytochrome Wire OmcS

The anaerobic bacterium <i>Geobacter sulfurreducens</i> produces extracellular, electronically conductive cytochrome polymer wires that are conductive over micron length scales. Structure models from cryo-electron microscopy data show OmcS wires form a linear chain of hemes along the protein wire axis, which is proposed as the structural basis supporting their electronic properties. However, the mechanism by which this heme arrangement supports long-range electronic conduction remains unknown. Structure models from cryo-electron microscopy data show these wires form a linear chain of hemes along the protein wire axis, which is proposed as the structural basis supporting their electronic properties. Existing computational models using static heme redox potentials and coupling energies fail to explain experimental observations, predicting conductances 10,000 to 100,000 times lower than measured values. Here, we investigate how dynamic disorder affects site energies, interheme coupling, and long-range electronic conductivity within these cytochrome wires. We introduce an approach to extract charge carrier site information directly from Kohn-Sham density functional theory, without employing projector schemes, and show that site and coupling energies are highly sensitive to changes in interheme geometry and the surrounding electrostatic environment. Unlike models that incorporate dynamic disorder as a thermally averaged quantity, our quantum charge carrier model incorporates proxies for dynamic disorder through decoherence corrections, yielding predicted diffusion coefficient closer to what is expected from experiment and comparable with other organic-based electronic materials. Based on these simulations, we propose that the instantaneous fluctuations of the local electrostatic environment can transiently lift energy degeneracies and delocalize charge carriers. These studies reveal how incorporating dynamic fluctuations associated with the environment resolves the discrepancy between theory and experiment in microbial cytochrome wires and highlight design principles for bioinspired, heme-based conductive materials.

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Publication Details

Journal
The Journal of Physical Chemistry B
Published
2025-11-08
DOI
https://doi.org/10.1021/acs.jpcb.5c04205
Citations
1
Primary Topic
Microbial Fuel Cells and Bioremediation
Type
article
Field-Weighted Citation Impact
0.80
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article

Investigating Electron Conductivity Regimes in the Bacterial Cytochrome Wire OmcS

Sahar Sharifzadeh, Luke Nambi Mohanam, Douglas J. Tobias, Allon I. Hochbaum et al.
1 citations
The Journal of Physical Chemistry B
Microbial Fuel Cells and Bioremediation
0.80
article

Investigating Electron Conductivity Regimes in the Bacterial Cytochrome Wire OmcS

Sahar Sharifzadeh, Luke Nambi Mohanam, Douglas J. Tobias, Allon I. Hochbaum, Ruqian Wu, Lei Gu, Yuanming Song, Rafael Umeda
article en
1 citations

Abstract

The anaerobic bacterium <i>Geobacter sulfurreducens</i> produces extracellular, electronically conductive cytochrome polymer wires that are conductive over micron length scales. Structure models from cryo-electron microscopy data show OmcS wires form a linear chain of hemes along the protein wire axis, which is proposed as the structural basis supporting their electronic properties. However, the mechanism by which this heme arrangement supports long-range electronic conduction remains unknown. Structure models from cryo-electron microscopy data show these wires form a linear chain of hemes along the protein wire axis, which is proposed as the structural basis supporting their electronic properties. Existing computational models using static heme redox potentials and coupling energies fail to explain experimental observations, predicting conductances 10,000 to 100,000 times lower than measured values. Here, we investigate how dynamic disorder affects site energies, interheme coupling, and long-range electronic conductivity within these cytochrome wires. We introduce an approach to extract charge carrier site information directly from Kohn-Sham density functional theory, without employing projector schemes, and show that site and coupling energies are highly sensitive to changes in interheme geometry and the surrounding electrostatic environment. Unlike models that incorporate dynamic disorder as a thermally averaged quantity, our quantum charge carrier model incorporates proxies for dynamic disorder through decoherence corrections, yielding predicted diffusion coefficient closer to what is expected from experiment and comparable with other organic-based electronic materials. Based on these simulations, we propose that the instantaneous fluctuations of the local electrostatic environment can transiently lift energy degeneracies and delocalize charge carriers. These studies reveal how incorporating dynamic fluctuations associated with the environment resolves the discrepancy between theory and experiment in microbial cytochrome wires and highlight design principles for bioinspired, heme-based conductive materials.

The Journal of Physical Chemistry BVol. 129(46)
Boston University (US), University of California, Irvine (US), Division of Materials Science and Engineering (AU), Sichuan Normal University (CN)
Openalex Percentile: Top 23%
Microbial Fuel Cells and Bioremediation
0.80
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