The Design of the Crystals Structure Study: I. Optimization of Data Collection on Modern Diffractometers

The disadvantages of the “strategy” scan-lists for diffraction experiments, created by the diffractometer software, are shown. The reason for these disadvantages is that the traditionally used goal function solves a limited, local meaning, for example, to obtain the best coverage of the reciprocal space. An approach is proposed that implements the principles of statistical randomization of the experiment and allows achieving the strategic goal of structural analysis: obtaining a model capable of reflecting the subtle details of the atomic structure. A scan-list balanced by most factors has been found, which in less time leads to obtaining experimental data of much higher quality than traditional lists. The use of a reference crystal, previously measured dozens of times on diffractometers around the world, has shown the advantage of the experimental data obtained by the new method. Increasing the balance and accuracy of the data resulted in maximum improvement of the values of the refinement criteria: to R1/wR2 = 0.53/0.59% and Δρ = –0.47/+0.30 e/Å3. The achievement of the strategic goal of the research of the reference crystal (confirmation of the anharmonic model of atomic displacement parameters) could be confirmed not only by the purification of the difference Fourier syntheses of electron density, which is sometimes visual and subjective, but also by a statistically flawless decrease in the R factors of refinement by 30–40 rel %. Data of such high quality are needed to study the dynamics of structural models under external conditions, for the detection and modeling of phase transitions, critical points, bio- and chemical activity of compounds, verification of computational structural methods.

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Publication Details

Journal
Crystallography Reports
Published
2025-10-01
DOI
https://doi.org/10.1134/s1063774525600425
Primary Topic
X-ray Diffraction in Crystallography
Type
article
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article

The Design of the Crystals Structure Study: I. Optimization of Data Collection on Modern Diffractometers

A.P. Dudka
Crystallography Reports
X-ray Diffraction in Crystallography
article

The Design of the Crystals Structure Study: I. Optimization of Data Collection on Modern Diffractometers

A.P. Dudka
article en

Abstract

The disadvantages of the “strategy” scan-lists for diffraction experiments, created by the diffractometer software, are shown. The reason for these disadvantages is that the traditionally used goal function solves a limited, local meaning, for example, to obtain the best coverage of the reciprocal space. An approach is proposed that implements the principles of statistical randomization of the experiment and allows achieving the strategic goal of structural analysis: obtaining a model capable of reflecting the subtle details of the atomic structure. A scan-list balanced by most factors has been found, which in less time leads to obtaining experimental data of much higher quality than traditional lists. The use of a reference crystal, previously measured dozens of times on diffractometers around the world, has shown the advantage of the experimental data obtained by the new method. Increasing the balance and accuracy of the data resulted in maximum improvement of the values of the refinement criteria: to R1/wR2 = 0.53/0.59% and Δρ = –0.47/+0.30 e/Å3. The achievement of the strategic goal of the research of the reference crystal (confirmation of the anharmonic model of atomic displacement parameters) could be confirmed not only by the purification of the difference Fourier syntheses of electron density, which is sometimes visual and subjective, but also by a statistically flawless decrease in the R factors of refinement by 30–40 rel %. Data of such high quality are needed to study the dynamics of structural models under external conditions, for the detection and modeling of phase transitions, critical points, bio- and chemical activity of compounds, verification of computational structural methods.

Crystallography ReportsVol. 70(5)
Kurchatov Institute (RU), A.V. Shubnikov Institute of Crystallography (RU)
Openalex Percentile: Top 74%
X-ray Diffraction in Crystallography
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The Design of the Crystals Structure Study: I. Optimization of Data Collection on Modern Diffractometers — A.P. Dudka · Crystallography Reports (2025) | TGRS Research Map | TGRS