Protocol for RNA-seq library preparation from low-volume total RNA by RNA/cDNA hybrid tagmentation

RNA sequencing (RNA-seq) is a widely used and powerful technique for studying gene expression. Among the various protocols, SHERRY (sequencing hetero RNA-DNA-hybrid) profiles polyadenylated RNAs by direct tagging of RNA/DNA hybrids and offers a robust and economical way for gene expression quantification. Here, we present a detailed protocol for standard SHERRY library preparation from 200 ng of total RNA. We describe steps of RNA purification, reverse transcription, hybrid tagmentation, and library generation. We then detail procedures for sequencing and data analysis. For complete details on the use and execution of this protocol, please refer to Di et al.<sup>1</sup>.

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Journal
STAR Protocols
Published
2025-11-05
DOI
https://doi.org/10.1016/j.xpro.2025.104181
Primary Topic
RNA modifications and cancer
Type
article
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article

Protocol for RNA-seq library preparation from low-volume total RNA by RNA/cDNA hybrid tagmentation

Wei Xu, Xi Chen, Yanling Chen, Yukun Hu
STAR Protocols
RNA modifications and cancer
article

Protocol for RNA-seq library preparation from low-volume total RNA by RNA/cDNA hybrid tagmentation

Wei Xu, Xi Chen, Yanling Chen, Yukun Hu
article en

Abstract

RNA sequencing (RNA-seq) is a widely used and powerful technique for studying gene expression. Among the various protocols, SHERRY (sequencing hetero RNA-DNA-hybrid) profiles polyadenylated RNAs by direct tagging of RNA/DNA hybrids and offers a robust and economical way for gene expression quantification. Here, we present a detailed protocol for standard SHERRY library preparation from 200 ng of total RNA. We describe steps of RNA purification, reverse transcription, hybrid tagmentation, and library generation. We then detail procedures for sequencing and data analysis. For complete details on the use and execution of this protocol, please refer to Di et al.<sup>1</sup>.

STAR ProtocolsVol. 6(4)
Southern University of Science and Technology (CN), Guangdong-Hongkong-Macau Joint Laboratory of Collaborative Innovation for Environmental Quality (CN), Guangzhou Medical University (CN)
Openalex Percentile: Top 71%
RNA modifications and cancer
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Protocol for RNA-seq library preparation from low-volume total RNA by RNA/cDNA hybrid tagmentation — Wei Xu, Xi Chen, et al. · STAR Protocols (2025) | TGRS Research Map | TGRS