Ribosomal Elongation of Trans-4-Aminocrotonic Acids into Nascent Peptide Chain

Expanding the structural diversity of ribosomally synthesized peptides is critical for the development of novel peptide therapeutics. Trans-4-aminocrotonic acid derivatives (Xcro), α,β-unsaturated nonproteinogenic γ-amino acids observed in marine natural products, impart peptides with enhanced lipophilicity, conformational rigidity, and protease resistance. Thus, these features would grant better pharmacological profiles to such peptides. However, the ribosomal incorporation of Xcro into nascent peptide chains has been considered challenging, based on the poor ribosomal compatibility of γ-aminoacyl-tRNA to undergo self-hydrolysis. Here, we report successful incorporation of Xcro using Xcro-tRNA<sup>Pro1E2</sup> prepared by flexizymes in the custom-made flexible <i>in vitro</i> translation (FIT) system. Our findings establish Xcro is a privileged γ-amino acid scaffold for expanding the chemical space of ribosomally encoded peptides, paving the way for the de novo discovery of peptide ligands with a unique structural backbone and post-translational modification functionality.

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Publication Details

Journal
Journal of the American Chemical Society
Published
2025-11-04
DOI
https://doi.org/10.1021/jacs.5c15473
Primary Topic
RNA and protein synthesis mechanisms
Type
article
Field-Weighted Citation Impact
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article

Ribosomal Elongation of Trans-4-Aminocrotonic Acids into Nascent Peptide Chain

Adam T. Beattie, Hiroaki Suga, Xiyun Ye
Journal of the American Chemical Society
RNA and protein synthesis mechanisms
article

Ribosomal Elongation of Trans-4-Aminocrotonic Acids into Nascent Peptide Chain

Adam T. Beattie, Hiroaki Suga, Xiyun Ye
article en

Abstract

Expanding the structural diversity of ribosomally synthesized peptides is critical for the development of novel peptide therapeutics. Trans-4-aminocrotonic acid derivatives (Xcro), α,β-unsaturated nonproteinogenic γ-amino acids observed in marine natural products, impart peptides with enhanced lipophilicity, conformational rigidity, and protease resistance. Thus, these features would grant better pharmacological profiles to such peptides. However, the ribosomal incorporation of Xcro into nascent peptide chains has been considered challenging, based on the poor ribosomal compatibility of γ-aminoacyl-tRNA to undergo self-hydrolysis. Here, we report successful incorporation of Xcro using Xcro-tRNA<sup>Pro1E2</sup> prepared by flexizymes in the custom-made flexible <i>in vitro</i> translation (FIT) system. Our findings establish Xcro is a privileged γ-amino acid scaffold for expanding the chemical space of ribosomally encoded peptides, paving the way for the de novo discovery of peptide ligands with a unique structural backbone and post-translational modification functionality.

Journal of the American Chemical SocietyVol. 147(46)
The University of Tokyo (JP)
Openalex Percentile: Top 71%
RNA and protein synthesis mechanisms
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