Chromosome-level genome assembly and annotation of the spottedtail morwong (Cheilodactylus zonatus)

The spottedtail morwong (Cheilodactylus zonatus), belonging to the family Cheilodactylidae and the genus Cheilodactylus, is an important economic fish known for its delicate flesh and rich nutritional value. It mainly feeds on crustaceans and mollusks and is widely distributed in the western Pacific Ocean. However, the lack of effective reference genomes has seriously hindered further research on its biology and genomic breeding. Here, we present a high-quality chromosome-level genome assembly of C. zonatus using PacBio sequencing and Hi-C technologies. The assembled genome has a total length of 612.58 Mb with a contig N50 of 25.86 Mb. Approximately 97.8% of the assembly length was anchored to 24 pseudochromosomes. A total of 26,083 protein-coding genes were predicted, among which 23,393 genes (89.67%) were functionally annotated. The completeness of the assembly was estimated to be 98.2% by BUSCO assessment. As we know, this is the first reference genome in the family Cheilodactylidae, which will provide pivotal genomic resources for further biological and evolutionary studies of C. zonatus, and facilitate the development of genomic hybridization breeding in the artificial C. zonatus industry.

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Journal
Scientific Data
Published
2025-11-04
DOI
https://doi.org/10.1038/s41597-025-06029-x
Primary Topic
Genomics and Phylogenetic Studies
Type
article
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article

Chromosome-level genome assembly and annotation of the spottedtail morwong (Cheilodactylus zonatus)

Kunpeng Shi, Mengyang Chang, Wenhui Ma, Wensheng Li et al.
Scientific Data
Genomics and Phylogenetic Studies
article

Chromosome-level genome assembly and annotation of the spottedtail morwong (Cheilodactylus zonatus)

Kunpeng Shi, Mengyang Chang, Wenhui Ma, Wensheng Li, Zhenxia Sha
article en

Abstract

The spottedtail morwong (Cheilodactylus zonatus), belonging to the family Cheilodactylidae and the genus Cheilodactylus, is an important economic fish known for its delicate flesh and rich nutritional value. It mainly feeds on crustaceans and mollusks and is widely distributed in the western Pacific Ocean. However, the lack of effective reference genomes has seriously hindered further research on its biology and genomic breeding. Here, we present a high-quality chromosome-level genome assembly of C. zonatus using PacBio sequencing and Hi-C technologies. The assembled genome has a total length of 612.58 Mb with a contig N50 of 25.86 Mb. Approximately 97.8% of the assembly length was anchored to 24 pseudochromosomes. A total of 26,083 protein-coding genes were predicted, among which 23,393 genes (89.67%) were functionally annotated. The completeness of the assembly was estimated to be 98.2% by BUSCO assessment. As we know, this is the first reference genome in the family Cheilodactylidae, which will provide pivotal genomic resources for further biological and evolutionary studies of C. zonatus, and facilitate the development of genomic hybridization breeding in the artificial C. zonatus industry.

Scientific DataVol. 12(1)
Qingdao University (CN), Yantai Academy of Agricultural Sciences (CN), Qingdao National Laboratory for Marine Science and Technology (CN), Innovation Team (China) (HK), Chinese Academy of Fishery Sciences (CN)
Openalex Percentile: Top 71%
Genomics and Phylogenetic Studies
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Chromosome-level genome assembly and annotation of the spottedtail morwong (Cheilodactylus zonatus) — Kunpeng Shi, Mengyang Chang, et al. · Scientific Data (2025) | TGRS Research Map | TGRS