Exploring the formation of medium-sized cyclic amines within self-assembled yoctoliter inner-spaces
Medium-sized (7-11-membered) rings are difficult to cyclize for both enthalpic and entropic reasons. Moreover, S<sub>N</sub>2 cyclizations to such products in the greenest of solvent (H<sub>2</sub>O) are complicated by competing substrate hydrolysis. Here we explore the utility of the yoctoliter (10<sup>-24</sup> L) inner-space of a dimeric container - assembled <i>via</i> the hydrophobic effect - to catalyze the formation of strained, 7-11-membered cyclic amines. Specifically, we examine the ability of the dimeric capsule of deep-cavity cavitand <i>octa</i>-acid 1 to promote cyclization processes, by leveraging relatively large <i>pseudo</i>-halide sulfonate leaving groups to minimize product inhibition and engender catalysis. We find that strained 7-membered azepane can be formed catalytically, with reaction rates dependent on the conformation or motif of the bound guest. We also find that the hydrolysis rate of a bound guest can be up to four orders of magnitude slower than the free state, and in such watertight complexes strained 11-membered <i>aza</i>-cycloundecane can also be formed. More generally, our results provide the first examples of S<sub>N</sub>2 cyclizations to medium-sized cyclic amines in water, and provide benchmarks in quantifying the degree of water tightness of water-based container molecules.
Authors
- Yahya A. Ismaiel (ORCID: https://orcid.org/0009-0009-7909-1948)
- Douglas Rogers
- Bruce C. Gibb (ORCID: https://orcid.org/0000-0002-4478-4084)
Institutions
- Tulane University (US)
Publication Details
- Journal
- Chemical Science
- Published
- 2025-11-04
- DOI
- https://doi.org/10.1039/d5sc07390a
- Primary Topic
- Supramolecular Chemistry and Complexes
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- National Science Foundation
- Division of Chemistry