Exploring the formation of medium-sized cyclic amines within self-assembled yoctoliter inner-spaces

Medium-sized (7-11-membered) rings are difficult to cyclize for both enthalpic and entropic reasons. Moreover, S<sub>N</sub>2 cyclizations to such products in the greenest of solvent (H<sub>2</sub>O) are complicated by competing substrate hydrolysis. Here we explore the utility of the yoctoliter (10<sup>-24</sup> L) inner-space of a dimeric container - assembled <i>via</i> the hydrophobic effect - to catalyze the formation of strained, 7-11-membered cyclic amines. Specifically, we examine the ability of the dimeric capsule of deep-cavity cavitand <i>octa</i>-acid 1 to promote cyclization processes, by leveraging relatively large <i>pseudo</i>-halide sulfonate leaving groups to minimize product inhibition and engender catalysis. We find that strained 7-membered azepane can be formed catalytically, with reaction rates dependent on the conformation or motif of the bound guest. We also find that the hydrolysis rate of a bound guest can be up to four orders of magnitude slower than the free state, and in such watertight complexes strained 11-membered <i>aza</i>-cycloundecane can also be formed. More generally, our results provide the first examples of S<sub>N</sub>2 cyclizations to medium-sized cyclic amines in water, and provide benchmarks in quantifying the degree of water tightness of water-based container molecules.

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Publication Details

Journal
Chemical Science
Published
2025-11-04
DOI
https://doi.org/10.1039/d5sc07390a
Primary Topic
Supramolecular Chemistry and Complexes
Type
article
Field-Weighted Citation Impact
0.00

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article

Exploring the formation of medium-sized cyclic amines within self-assembled yoctoliter inner-spaces

Yahya A. Ismaiel, Douglas Rogers, Bruce C. Gibb
Chemical Science
Supramolecular Chemistry and Complexes
article

Exploring the formation of medium-sized cyclic amines within self-assembled yoctoliter inner-spaces

Yahya A. Ismaiel, Douglas Rogers, Bruce C. Gibb
article en

Abstract

Medium-sized (7-11-membered) rings are difficult to cyclize for both enthalpic and entropic reasons. Moreover, S<sub>N</sub>2 cyclizations to such products in the greenest of solvent (H<sub>2</sub>O) are complicated by competing substrate hydrolysis. Here we explore the utility of the yoctoliter (10<sup>-24</sup> L) inner-space of a dimeric container - assembled <i>via</i> the hydrophobic effect - to catalyze the formation of strained, 7-11-membered cyclic amines. Specifically, we examine the ability of the dimeric capsule of deep-cavity cavitand <i>octa</i>-acid 1 to promote cyclization processes, by leveraging relatively large <i>pseudo</i>-halide sulfonate leaving groups to minimize product inhibition and engender catalysis. We find that strained 7-membered azepane can be formed catalytically, with reaction rates dependent on the conformation or motif of the bound guest. We also find that the hydrolysis rate of a bound guest can be up to four orders of magnitude slower than the free state, and in such watertight complexes strained 11-membered <i>aza</i>-cycloundecane can also be formed. More generally, our results provide the first examples of S<sub>N</sub>2 cyclizations to medium-sized cyclic amines in water, and provide benchmarks in quantifying the degree of water tightness of water-based container molecules.

Chemical ScienceVol. 17(2)
Tulane University (US)
National Science Foundation, Division of Chemistry
Openalex Percentile: Top 75%
Supramolecular Chemistry and Complexes
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