ncPick: A Lightweight Toolkit for Extracting, Analyzing, and Visualizing ECMWF ERA5 NetCDF Data

The European Centre for Medium-Range Weather Forecasts (ECMWF) Reanalysis v5 (ERA5) datasets provide a rich source of climatological data. However, their Network Common Data Form (NetCDF) structure can be a barrier for researchers who are not experienced with specialized data tools or programming languages. To address this challenge, we developed ncPick, a lightweight, Windows-based application designed to make ERA5 data more accessible and easier to use. The software enables users to load NetCDF files, select points of interest manually or through shapefiles, and export the data directly to Comma-separated values (CSV) format for further processing in common tools such as Excel, R, or within ncPick itself. Additional modules allow for quick visualization, descriptive statistics, interpolation, and the generation of time-of-day heatmaps, as well as practical data handling functions such as merging and downsampling CSV files based on the time-axis. Validation tests confirmed that ncPick outputs are consistent with those from established tools (such as Panoply). The toolkit was found to be stable across different Windows systems and suitable for a range of datasets. While it has limitations with very large files and does not include automated data download for version 1 of the software, ncPick offers an accessible solution for researchers, students, and other professionals seeking a reliable and intuitive way to work with ERA5 NetCDF data.

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Published
2025-11-02
DOI
https://doi.org/10.3390/data10110178
Primary Topic
Climate variability and models
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article
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article

ncPick: A Lightweight Toolkit for Extracting, Analyzing, and Visualizing ECMWF ERA5 NetCDF Data

Sreten Jevremović, Aleksandra Kolarski, Filip Arnaut, Vladimir A. Srécković
Data
Climate variability and models
article

ncPick: A Lightweight Toolkit for Extracting, Analyzing, and Visualizing ECMWF ERA5 NetCDF Data

Sreten Jevremović, Aleksandra Kolarski, Filip Arnaut, Vladimir A. Srécković
article en

Abstract

The European Centre for Medium-Range Weather Forecasts (ECMWF) Reanalysis v5 (ERA5) datasets provide a rich source of climatological data. However, their Network Common Data Form (NetCDF) structure can be a barrier for researchers who are not experienced with specialized data tools or programming languages. To address this challenge, we developed ncPick, a lightweight, Windows-based application designed to make ERA5 data more accessible and easier to use. The software enables users to load NetCDF files, select points of interest manually or through shapefiles, and export the data directly to Comma-separated values (CSV) format for further processing in common tools such as Excel, R, or within ncPick itself. Additional modules allow for quick visualization, descriptive statistics, interpolation, and the generation of time-of-day heatmaps, as well as practical data handling functions such as merging and downsampling CSV files based on the time-axis. Validation tests confirmed that ncPick outputs are consistent with those from established tools (such as Panoply). The toolkit was found to be stable across different Windows systems and suitable for a range of datasets. While it has limitations with very large files and does not include automated data download for version 1 of the software, ncPick offers an accessible solution for researchers, students, and other professionals seeking a reliable and intuitive way to work with ERA5 NetCDF data.

DataVol. 10(11)
University of Belgrade (RS), Institute of Physics Belgrade (RS)
Openalex Percentile: Top 70%
Climate variability and models
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ncPick: A Lightweight Toolkit for Extracting, Analyzing, and Visualizing ECMWF ERA5 NetCDF Data — Sreten Jevremović, Aleksandra Kolarski, et al. · Data (2025) | TGRS Research Map | TGRS