De novo design and evolution of an artificial metathase for cytoplasmic olefin metathesis

Artificial metalloenzymes present a promising avenue for abiotic catalysis within living systems. However, their in vivo application is currently limited by critical challenges, particularly in selecting suitable protein scaffolds capable of binding abiotic cofactors and maintaining catalytic activity in complex media. Here we address these limitations by introducing an artificial metathase-an artificial metalloenzyme designed for ring-closing metathesis-for whole-cell biocatalysis. Our approach integrates a tailored metal cofactor into a hyper-stable, de novo-designed protein. By combining computational design with genetic optimization, a binding affinity (<i>K</i> <sub>D</sub> ≤ 0.2 μM) between the protein scaffold and cofactor is achieved through supramolecular anchoring. Directed evolution of the artificial metathase yielded variants exhibiting excellent catalytic performance (turnover number ≥1,000) and biocompatibility. This work represents a pronounced leap in the de novo design and in cellulo engineering of artificial metalloenzymes, paving the way for abiological catalysis in living systems.

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Publication Details

Journal
Nature Catalysis
Published
2025-11-03
DOI
https://doi.org/10.1038/s41929-025-01436-0
Citations
2
Primary Topic
Cyclopropane Reaction Mechanisms
Type
article
Field-Weighted Citation Impact
1.87

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article

De novo design and evolution of an artificial metathase for cytoplasmic olefin metathesis

Indrek Kalvet, Xiang Zhang, Zhi Zou, Dongping Chen et al.
2 citations
Nature Catalysis
Cyclopropane Reaction Mechanisms
1.87
article

De novo design and evolution of an artificial metathase for cytoplasmic olefin metathesis

Indrek Kalvet, Xiang Zhang, Zhi Zou, Dongping Chen, E. Matthew Morris, David A. Baker, Thomas R. Ward, M. Ernst, Boris Lozhkin, Kailin Zhang
article en
2 citations

Abstract

Artificial metalloenzymes present a promising avenue for abiotic catalysis within living systems. However, their in vivo application is currently limited by critical challenges, particularly in selecting suitable protein scaffolds capable of binding abiotic cofactors and maintaining catalytic activity in complex media. Here we address these limitations by introducing an artificial metathase-an artificial metalloenzyme designed for ring-closing metathesis-for whole-cell biocatalysis. Our approach integrates a tailored metal cofactor into a hyper-stable, de novo-designed protein. By combining computational design with genetic optimization, a binding affinity (<i>K</i> <sub>D</sub> ≤ 0.2 μM) between the protein scaffold and cofactor is achieved through supramolecular anchoring. Directed evolution of the artificial metathase yielded variants exhibiting excellent catalytic performance (turnover number ≥1,000) and biocompatibility. This work represents a pronounced leap in the de novo design and in cellulo engineering of artificial metalloenzymes, paving the way for abiological catalysis in living systems.

Nature CatalysisVol. 8(11)
Howard Hughes Medical Institute (US), University of Basel (CH), University of Washington (US)
National Science Foundation, Universität Basel, Open Philanthropy Project, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
Openalex Percentile: Top 13%
Cyclopropane Reaction Mechanisms
1.87
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