Influence of C5 Methylation on Cytidine Photohydration Revealed by Deep-Ultraviolet Transient Absorption Anisotropy Spectroscopy

C5 methylation enhances the photostability of monomeric cytidine (Cyd), but the molecular basis of this effect has remained unresolved. Here, we examine the photodynamics of Cyd and its C5-methylated analogue, 5-methylcytidine (5mCyd), using femtosecond deep-ultraviolet transient absorption anisotropy spectroscopy. Recent theoretical and spectroscopic studies have highlighted a metastable ground-state intermediate with a twisted C5═C6 double bond, which plays a key role in the photodynamics of pyrimidine nucleobases. In Cyd, our anisotropy-resolved measurements captured the sub-picosecond <sup>1</sup>ππ* → S<sub>0</sub> internal conversion, with no detectable signature of a long-lived <sup>1</sup>nπ* state. Instead, our results support the generation of a ground-state twisted conformer as the reactive intermediate for hydration. In 5mCyd, the yield of this intermediate is significantly reduced, indicating that C5 methylation suppresses its formation. The observed correlation between twisted conformer formation and the photostability toward hydration highlights how subtle chemical modifications can markedly alter photochemical activities.

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Publication Details

Journal
The Journal of Physical Chemistry Letters
Published
2025-11-03
DOI
https://doi.org/10.1021/acs.jpclett.5c02822
Primary Topic
DNA and Nucleic Acid Chemistry
Type
article
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article

Influence of C5 Methylation on Cytidine Photohydration Revealed by Deep-Ultraviolet Transient Absorption Anisotropy Spectroscopy

Yuki Obara, Toshinori Suzuki, Shunsuke Adachi, Rin Shiomoto
The Journal of Physical Chemistry Letters
DNA and Nucleic Acid Chemistry
article

Influence of C5 Methylation on Cytidine Photohydration Revealed by Deep-Ultraviolet Transient Absorption Anisotropy Spectroscopy

Yuki Obara, Toshinori Suzuki, Shunsuke Adachi, Rin Shiomoto
article en

Abstract

C5 methylation enhances the photostability of monomeric cytidine (Cyd), but the molecular basis of this effect has remained unresolved. Here, we examine the photodynamics of Cyd and its C5-methylated analogue, 5-methylcytidine (5mCyd), using femtosecond deep-ultraviolet transient absorption anisotropy spectroscopy. Recent theoretical and spectroscopic studies have highlighted a metastable ground-state intermediate with a twisted C5═C6 double bond, which plays a key role in the photodynamics of pyrimidine nucleobases. In Cyd, our anisotropy-resolved measurements captured the sub-picosecond <sup>1</sup>ππ* → S<sub>0</sub> internal conversion, with no detectable signature of a long-lived <sup>1</sup>nπ* state. Instead, our results support the generation of a ground-state twisted conformer as the reactive intermediate for hydration. In 5mCyd, the yield of this intermediate is significantly reduced, indicating that C5 methylation suppresses its formation. The observed correlation between twisted conformer formation and the photostability toward hydration highlights how subtle chemical modifications can markedly alter photochemical activities.

The Journal of Physical Chemistry LettersVol. 16(45)
Kyoto University (JP)
Openalex Percentile: Top 72%
DNA and Nucleic Acid Chemistry
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