USP25 deubiquitinates cytosolic METTL3 to impede glioma proliferation via an m6A-independent pathway

METTL3 exhibits distinct tumorigenic roles in the nucleus and cytoplasm, but whether its post-transcriptional modifications vary by subcellular localization remains unclear. Here, we identify METTL3 as a substrate of the deubiquitinase USP25, which stabilizes cytosolic METTL3 by cleaving its K48-linked polyubiquitin chains, preventing proteasomal degradation, without affecting nuclear METTL3 or global m6A abundance. The analysis of clinical glioma samples reveals a positive correlation between USP25 and METTL3 protein levels, with both significantly upregulated in high-grade glioma. Moreover, USP25 enhances EGFR expression through cytosolic METTL3, driving glioma progression. Our findings highlight that METTL3 undergoes distinct post-translational modifications based on its subcellular localization, providing new insights into the spatial regulation of METTL3 in gliomas.

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Journal
iScience
Published
2025-10-31
DOI
https://doi.org/10.1016/j.isci.2025.113918
Primary Topic
RNA modifications and cancer
Type
article
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article

USP25 deubiquitinates cytosolic METTL3 to impede glioma proliferation via an m6A-independent pathway

Wujie Zhao, Sifang Chen, Liwei Zhou, Ya‐Hui Hu et al.
iScience
RNA modifications and cancer
article

USP25 deubiquitinates cytosolic METTL3 to impede glioma proliferation via an m6A-independent pathway

Wujie Zhao, Sifang Chen, Liwei Zhou, Ya‐Hui Hu, Jiawei He, Shouren Chen, Zhenwei Lu, Hanwen Lu, Wanhong Han, Xin Gao, Jianhua Yu, Zhanxiang Wang, Xinwen Liao, Bingchang Zhang, Yuanyuan Xie, Yaya Zhang, Xinguang Qiu, Xiyao Liu, Wentao Zhao, Wenhua Li, Guowei Tan, Yanyan Geng
article en

Abstract

METTL3 exhibits distinct tumorigenic roles in the nucleus and cytoplasm, but whether its post-transcriptional modifications vary by subcellular localization remains unclear. Here, we identify METTL3 as a substrate of the deubiquitinase USP25, which stabilizes cytosolic METTL3 by cleaving its K48-linked polyubiquitin chains, preventing proteasomal degradation, without affecting nuclear METTL3 or global m6A abundance. The analysis of clinical glioma samples reveals a positive correlation between USP25 and METTL3 protein levels, with both significantly upregulated in high-grade glioma. Moreover, USP25 enhances EGFR expression through cytosolic METTL3, driving glioma progression. Our findings highlight that METTL3 undergoes distinct post-translational modifications based on its subcellular localization, providing new insights into the spatial regulation of METTL3 in gliomas.

iScienceVol. 28(12)
Fujian Medical University (CN), Xiamen University (CN), First Affiliated Hospital of Xiamen University (CN), Zhangzhou Municipal Hospital of Fujian Province (CN), First Affiliated Hospital of Fujian Medical University (CN), Xiamen Chang Gung Hospital (CN), Xiamen Maternal and Child Health Hospital (CN)
Openalex Percentile: Top 72%
RNA modifications and cancer
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