Accurate identification of medically important Aedes mosquitoes (Diptera: Culicidae) in Thailand through DNA barcoding, wing geometric morphometrics, and machine learning

Mosquito-borne diseases remain a significant public health concern, underscoring the need for accurate species-level identification of vector species, including <i>Aedes</i> mosquitoes. Identification based solely on morphology is often limited by interspecific overlap, environmentally induced phenotypic plasticity, and physical damage to field-collected specimens. This study evaluated nine <i>Aedes</i> species (<i>Ae. aegypti</i>, <i>Ae. albopictus</i>, <i>Ae. chrysolineatus</i>, <i>Ae. lineatopennis</i>, <i>Ae. macfarlanei</i>, <i>Ae. poicilius</i>, <i>Ae. vexans</i>, <i>Ae. vigilax</i>, and <i>Ae. vittatus</i>) and a related taxon (<i>Aedeomyia catasticta</i>) in Thailand, using DNA barcoding, wing geometric morphometric (WGM) analysis, and the Random Forests (RF) machine learning algorithm. DNA barcoding of the cytochrome <i>c</i> oxidase subunit 1 (<i>cox</i>1) gene showed strong concordance with morphological classifications, confirming its reliability for species-level identification. Across all 10 species, sequence similarity with GenBank and the Barcode of Life Data System ranged from 96% to 100%, highlighting reliable identification when robust references are available. WGM analysis revealed significant wing shape differences among species (<i>P</i> < 0.05), with 91.05% classification accuracy. The Mahalanobis distance and RF algorithms, applied to newly field-collected specimens assigned as unknown species, demonstrated strong discriminatory power, both achieving 100% accuracy for seven species based on wing shape. Slightly lower accuracy was observed for three species, with Mahalanobis distance achieving 90% (one misclassified individual) and the RF algorithm 80% (two misclassified individuals). These findings present a practical guideline for identifying <i>Aedes</i> mosquitoes and a related taxon in Thailand by integrating approaches. Accurate species identification is essential for selecting targeted vector control strategies and enhancing the effectiveness of <i>Aedes</i>-borne disease surveillance and management.

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Publication Details

Journal
Current Research in Parasitology and Vector-Borne Diseases
Published
2025-01-01
DOI
https://doi.org/10.1016/j.crpvbd.2025.100334
Primary Topic
Mosquito-borne diseases and control
Type
article
Field-Weighted Citation Impact
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article

Accurate identification of medically important Aedes mosquitoes (Diptera: Culicidae) in Thailand through DNA barcoding, wing geometric morphometrics, and machine learning

Sedthapong Laojun, Sineewanlaya Wichit, Rodolphe Hamel, Tanasak Changbunjong et al.
Current Research in Parasitology and Vector-Borne Diseases
Mosquito-borne diseases and control
article

Accurate identification of medically important Aedes mosquitoes (Diptera: Culicidae) in Thailand through DNA barcoding, wing geometric morphometrics, and machine learning

Sedthapong Laojun, Sineewanlaya Wichit, Rodolphe Hamel, Tanasak Changbunjong, Morakot Kaewthamasorn, Tanawat Chaiphongpachara, Saowalak Kaewmee, Pattaranatcha Charnwichai
article en

Abstract

Mosquito-borne diseases remain a significant public health concern, underscoring the need for accurate species-level identification of vector species, including <i>Aedes</i> mosquitoes. Identification based solely on morphology is often limited by interspecific overlap, environmentally induced phenotypic plasticity, and physical damage to field-collected specimens. This study evaluated nine <i>Aedes</i> species (<i>Ae. aegypti</i>, <i>Ae. albopictus</i>, <i>Ae. chrysolineatus</i>, <i>Ae. lineatopennis</i>, <i>Ae. macfarlanei</i>, <i>Ae. poicilius</i>, <i>Ae. vexans</i>, <i>Ae. vigilax</i>, and <i>Ae. vittatus</i>) and a related taxon (<i>Aedeomyia catasticta</i>) in Thailand, using DNA barcoding, wing geometric morphometric (WGM) analysis, and the Random Forests (RF) machine learning algorithm. DNA barcoding of the cytochrome <i>c</i> oxidase subunit 1 (<i>cox</i>1) gene showed strong concordance with morphological classifications, confirming its reliability for species-level identification. Across all 10 species, sequence similarity with GenBank and the Barcode of Life Data System ranged from 96% to 100%, highlighting reliable identification when robust references are available. WGM analysis revealed significant wing shape differences among species (<i>P</i> < 0.05), with 91.05% classification accuracy. The Mahalanobis distance and RF algorithms, applied to newly field-collected specimens assigned as unknown species, demonstrated strong discriminatory power, both achieving 100% accuracy for seven species based on wing shape. Slightly lower accuracy was observed for three species, with Mahalanobis distance achieving 90% (one misclassified individual) and the RF algorithm 80% (two misclassified individuals). These findings present a practical guideline for identifying <i>Aedes</i> mosquitoes and a related taxon in Thailand by integrating approaches. Accurate species identification is essential for selecting targeted vector control strategies and enhancing the effectiveness of <i>Aedes</i>-borne disease surveillance and management.

Current Research in Parasitology and Vector-Borne DiseasesVol. 8
Centre National de la Recherche Scientifique (FR), Chulalongkorn University (TH), Université de Montpellier (FR), Mahidol University (TH), Maladies Infectieuses et Vecteurs: Écologie, Génétique, Évolution et Contrôle (FR), Suan Sunandha Rajabhat University (TH), Institut de Recherche pour le Développement (FR)
Openalex Percentile: Top 58%
Mosquito-borne diseases and control
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