Success and Limitations of Current Force Fields for the Description of RNA–Ligand Complexes

We present a systematic assessment of the last generation of RNA force fields to reproduce the structures and dynamics of ligand-RNA complexes. Our comprehensive analysis helped not only to define the more reliable force field to represent complex structures but also suggests details that can be improved and provide a critical analysis of the quality of experimental structures in complex systems that are expected to be very flexible and environment dependent.

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Publication Details

Journal
The Journal of Physical Chemistry B
Published
2025-10-31
DOI
https://doi.org/10.1021/acs.jpcb.5c05262
Citations
1
Primary Topic
RNA and protein synthesis mechanisms
Type
article
Field-Weighted Citation Impact
0.81
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article

Success and Limitations of Current Force Fields for the Description of RNA–Ligand Complexes

Modesto Orozco, Israel Serrano‐Chacón, Federica Battistini, Paula Fernández Migens
1 citations
The Journal of Physical Chemistry B
RNA and protein synthesis mechanisms
0.81
article

Success and Limitations of Current Force Fields for the Description of RNA–Ligand Complexes

Modesto Orozco, Israel Serrano‐Chacón, Federica Battistini, Paula Fernández Migens
article en
1 citations

Abstract

We present a systematic assessment of the last generation of RNA force fields to reproduce the structures and dynamics of ligand-RNA complexes. Our comprehensive analysis helped not only to define the more reliable force field to represent complex structures but also suggests details that can be improved and provide a critical analysis of the quality of experimental structures in complex systems that are expected to be very flexible and environment dependent.

The Journal of Physical Chemistry BVol. 129(45)
Institute for Research in Biomedicine (ES), Universitat de Barcelona (ES)
Openalex Percentile: Top 22%
RNA and protein synthesis mechanisms
0.81
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