<i>HoToPy</i> : a toolbox for X-ray holo-tomography in Python

We present a Python toolbox for holographic and tomographic X-ray imaging. It comprises a collection of phase retrieval algorithms for the deeply holographic and direct contrast imaging regimes, including non-linear approaches and extended choices of regularization, constraint sets and optimizers, all implemented with a unified and intuitive interface. Moreover, it features auxiliary functions for (tomographic) alignment, image processing and simulation of imaging experiments. The capability of the toolbox is illustrated by an example of a catalytic nanoparticle, imaged in the deeply holographic regime at the `GINIX' instrument of the P10 beamline at the PETRA III storage ring (DESY, Hamburg, Germany). Due to its modular design, the toolbox can be used for algorithmic development and benchmarking in a lean and flexible manner, or be interfaced and integrated in the reconstruction pipeline of other synchrotron or X-ray free-electron laser instruments for phase imaging based on propagation.

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Publication Details

Journal
Journal of Synchrotron Radiation
Published
2025-10-14
DOI
https://doi.org/10.1107/s1600577525008550
Citations
2
Primary Topic
Advanced X-ray Imaging Techniques
Type
article
Field-Weighted Citation Impact
3.77
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article

HoToPy : a toolbox for X-ray holo-tomography in Python

Paul Meyer, Tim Salditt, Leon Merten Lohse, Jens Lucht
2 citations
Journal of Synchrotron Radiation
Advanced X-ray Imaging Techniques
3.77
article

HoToPy : a toolbox for X-ray holo-tomography in Python

Paul Meyer, Tim Salditt, Leon Merten Lohse, Jens Lucht
article en
2 citations

Abstract

We present a Python toolbox for holographic and tomographic X-ray imaging. It comprises a collection of phase retrieval algorithms for the deeply holographic and direct contrast imaging regimes, including non-linear approaches and extended choices of regularization, constraint sets and optimizers, all implemented with a unified and intuitive interface. Moreover, it features auxiliary functions for (tomographic) alignment, image processing and simulation of imaging experiments. The capability of the toolbox is illustrated by an example of a catalytic nanoparticle, imaged in the deeply holographic regime at the `GINIX' instrument of the P10 beamline at the PETRA III storage ring (DESY, Hamburg, Germany). Due to its modular design, the toolbox can be used for algorithmic development and benchmarking in a lean and flexible manner, or be interfaced and integrated in the reconstruction pipeline of other synchrotron or X-ray free-electron laser instruments for phase imaging based on propagation.

Journal of Synchrotron RadiationVol. 32(6)
Universität Hamburg (DE), Max Planck Institute for the Structure and Dynamics of Matter (DE), University of Göttingen (DE)
Openalex Percentile: Top 6%
Advanced X-ray Imaging Techniques
3.77
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<i>HoToPy</i> : a toolbox for X-ray holo-tomography in Python — Paul Meyer, Tim Salditt, et al. · Journal of Synchrotron Radiation (2025) | TGRS Research Map | TGRS