Draft genome of Angelica Biserrata, a traditional Chinese medicinal herb of the Angelica genus (Apiaceae)

The genome of A. biserrata was sequenced using PacBio HiFi technology, generating 8.83 million high-fidelity reads with an average length of 14.2 kb (125.34 Gb, sequencing coverage 41 ×). The reads were assembled to give a draft genome of 4.52 Gb with an N50 contig length of 35.72 Mb. Chromosome-scale scaffolding was then performed using 300.87 Gb Hi-C data, resulting in a final genome assembly of 3.89 Gb with improved continuity (contig N50 = 34.42 Mb, scaffold N50 = 325.77 Mb). The genomic integrity was 96.59% (based on the embryophyta database of OrthoDB 10) through the evaluation of universal single copy direct homologous gene (BUSCO). At the same time, 3811.62 Mb long sequences were attached to 11 chromosomes, accounting for 97.86%.

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Publication Details

Journal
BMC Genomic Data
Published
2025-10-29
DOI
https://doi.org/10.1186/s12863-025-01371-w
Primary Topic
Traditional Chinese Medicine Analysis
Type
article
Field-Weighted Citation Impact
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article

Draft genome of Angelica Biserrata, a traditional Chinese medicinal herb of the Angelica genus (Apiaceae)

Yi-Quan Zhou, Xian-You Qu, Xue Liu, Yuanjiang Xu et al.
BMC Genomic Data
Traditional Chinese Medicine Analysis
article

Draft genome of Angelica Biserrata, a traditional Chinese medicinal herb of the Angelica genus (Apiaceae)

Yi-Quan Zhou, Xian-You Qu, Xue Liu, Yuanjiang Xu, Fangyu Zhao, Li L
article en

Abstract

The genome of A. biserrata was sequenced using PacBio HiFi technology, generating 8.83 million high-fidelity reads with an average length of 14.2 kb (125.34 Gb, sequencing coverage 41 ×). The reads were assembled to give a draft genome of 4.52 Gb with an N50 contig length of 35.72 Mb. Chromosome-scale scaffolding was then performed using 300.87 Gb Hi-C data, resulting in a final genome assembly of 3.89 Gb with improved continuity (contig N50 = 34.42 Mb, scaffold N50 = 325.77 Mb). The genomic integrity was 96.59% (based on the embryophyta database of OrthoDB 10) through the evaluation of universal single copy direct homologous gene (BUSCO). At the same time, 3811.62 Mb long sequences were attached to 11 chromosomes, accounting for 97.86%.

BMC Genomic DataVol. 26(1)
Tibet University (CN), Chongqing Academy of Chinese Materia Medica (CN)
Openalex Percentile: Top 52%
Traditional Chinese Medicine Analysis
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Draft genome of Angelica Biserrata, a traditional Chinese medicinal herb of the Angelica genus (Apiaceae) — Yi-Quan Zhou, Xian-You Qu, et al. · BMC Genomic Data (2025) | TGRS Research Map | TGRS