Draft genome of Angelica Biserrata, a traditional Chinese medicinal herb of the Angelica genus (Apiaceae)
The genome of A. biserrata was sequenced using PacBio HiFi technology, generating 8.83 million high-fidelity reads with an average length of 14.2 kb (125.34 Gb, sequencing coverage 41 ×). The reads were assembled to give a draft genome of 4.52 Gb with an N50 contig length of 35.72 Mb. Chromosome-scale scaffolding was then performed using 300.87 Gb Hi-C data, resulting in a final genome assembly of 3.89 Gb with improved continuity (contig N50 = 34.42 Mb, scaffold N50 = 325.77 Mb). The genomic integrity was 96.59% (based on the embryophyta database of OrthoDB 10) through the evaluation of universal single copy direct homologous gene (BUSCO). At the same time, 3811.62 Mb long sequences were attached to 11 chromosomes, accounting for 97.86%.
Authors
- Yi-Quan Zhou
- Xian-You Qu
- Xue Liu (ORCID: https://orcid.org/0000-0002-7600-5647)
- Yuanjiang Xu (ORCID: https://orcid.org/0009-0003-1108-3286)
- Fangyu Zhao
- Li L (ORCID: https://orcid.org/0000-0002-3833-2583)
Institutions
- Tibet University (CN)
- Chongqing Academy of Chinese Materia Medica (CN)
Publication Details
- Journal
- BMC Genomic Data
- Published
- 2025-10-29
- DOI
- https://doi.org/10.1186/s12863-025-01371-w
- Primary Topic
- Traditional Chinese Medicine Analysis
- Type
- article
- Field-Weighted Citation Impact
- 0.00