A Non‐G‐Quadruplex Hemin Aptamer Forms a Better Peroxidase Mimicking DNAzyme
G-quadruplex DNA is known to bind to hemin, forming a complex that exhibits peroxidase-like activity. A non-G-quadruplex aptamer named Hem1-2T also exhibits horseradish peroxidase (HRP) like activity upon binding to hemin. Herein, the catalytic characteristics of the Hem1-2T aptamer are studied and compared with PS2.M, an extensively studied G-quadruplex. From pH 6-8, the activity of Hem1-2T decreases with the increase in pH, which is similar to HRP, whereas the activity of PS2.M increases with pH, suggesting that Hem1-2T might be a better mechanistic mimic of HRP. Additionally, Hem1-2T is more effective at protecting hemin from degradation by H<sub>2</sub>O<sub>2</sub>, as evidenced by a slower decrease in the absorbance at 404 nm compared to PS2.M and more sustained catalysis. NMR spectroscopy indicates that hemin promotes ligand-induced structure formation in the Hem1-2T aptamer and forms a specific complex, whereas hemin interacts with the PS2.M G-quadruplex in a way leading to the disappearance of NMR peaks. Overall, the Hem1-2T-hemin complex is a better and more stable HRP mimic, supporting its potential applications in bioanalysis and biocatalysis.
Authors
- Yunus A. Kaiyum (ORCID: https://orcid.org/0009-0001-3086-9124)
- Claudia Rodríguez-Almazán (ORCID: https://orcid.org/0000-0002-8586-2317)
- Philip E. Johnson (ORCID: https://orcid.org/0000-0002-5573-4891)
- Juewen Liu (ORCID: https://orcid.org/0000-0001-5918-9336)
Institutions
- University of Waterloo (CA)
- York University (CA)
- Universidad Nacional Autónoma de México (MX)
Publication Details
- Journal
- ChemBioChem
- Published
- 2025-10-28
- DOI
- https://doi.org/10.1002/cbic.202500486
- Citations
- 1
- Primary Topic
- Advanced biosensing and bioanalysis techniques
- Type
- article
- Field-Weighted Citation Impact
- 0.81
Funders
- Canada Research Chairs
- University of Waterloo
- Natural Sciences and Engineering Research Council of Canada
- Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México