Single-cell and spatial transcriptomics reveal intratumor heterogeneity and immune evasion in natural killer/T cell lymphoma

Natural killer/T cell lymphoma (NKTCL), an Epstein-Barr virus-associated malignancy, is a highly aggressive subtype of non-Hodgkin lymphoma. However, the intratumoral heterogeneity and the interaction within the tumor microenvironment (TME) remain insufficiently understood. Here, we utilized single-cell and spatial transcriptomics to analyze tissues from NKTCL patients, identifying five malignant meta-programs (MPs) with distinct functional pathways, differentiation trajectories, and spatial distributions. Notably, the MP3 subgroup emerges at the early stages of tumor differentiation, characterized by the hyperactivation of MYC signaling and an association with poor prognosis. Intriguingly, pharmacologic inhibition of fatty acid-binding protein 5 (FABP5) leads to the downregulation of c-Myc and significantly impairs tumor growth both <i>in vitro</i> and <i>in vivo</i>. Furthermore, ligand-receptor interaction analysis reveals that tumor-associated macrophages (TAMs) may facilitate immune evasion and suppress T cell activity within the TME. Collectively, our findings elucidate the cellular heterogeneity and immune landscape of NKTCL, offering potential targets for therapeutic intervention.

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Publication Details

Journal
iScience
Published
2025-09-23
DOI
https://doi.org/10.1016/j.isci.2025.113626
Citations
2
Primary Topic
Lymphoma Diagnosis and Treatment
Type
article
Field-Weighted Citation Impact
2.94
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Single-cell and spatial transcriptomics reveal intratumor heterogeneity and immune evasion in natural killer/T cell lymphoma

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2 citations
iScience
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article

Single-cell and spatial transcriptomics reveal intratumor heterogeneity and immune evasion in natural killer/T cell lymphoma

Guibo Li, Dan‐Ling Dai, Youqiong Ye, Kui Wu, Qingqing Cai, Qian Zhong, Jun Cai, Ru Lv, Wenlong Zhong, Panpan Liu, Yuchen Zhang, Lei Wang, Jiahui Wang, Lirong Li, Biaojie Huang, Shu‐Yun Ma, Yi Xia, Qihua Zou, Shichen Dong
article en
2 citations

Abstract

Natural killer/T cell lymphoma (NKTCL), an Epstein-Barr virus-associated malignancy, is a highly aggressive subtype of non-Hodgkin lymphoma. However, the intratumoral heterogeneity and the interaction within the tumor microenvironment (TME) remain insufficiently understood. Here, we utilized single-cell and spatial transcriptomics to analyze tissues from NKTCL patients, identifying five malignant meta-programs (MPs) with distinct functional pathways, differentiation trajectories, and spatial distributions. Notably, the MP3 subgroup emerges at the early stages of tumor differentiation, characterized by the hyperactivation of MYC signaling and an association with poor prognosis. Intriguingly, pharmacologic inhibition of fatty acid-binding protein 5 (FABP5) leads to the downregulation of c-Myc and significantly impairs tumor growth both <i>in vitro</i> and <i>in vivo</i>. Furthermore, ligand-receptor interaction analysis reveals that tumor-associated macrophages (TAMs) may facilitate immune evasion and suppress T cell activity within the TME. Collectively, our findings elucidate the cellular heterogeneity and immune landscape of NKTCL, offering potential targets for therapeutic intervention.

iScienceVol. 28(10)
BGI Group (China) (CN), Central South University (CN), Shenzhen University (CN), Shanghai Jiao Tong University (CN), Third Xiangya Hospital (CN), University of Chinese Academy of Sciences (CN), BGI Genomics, BGI Research (CN)
Openalex Percentile: Top 8%
Lymphoma Diagnosis and Treatment
2.94
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