ColabReaction: Accelerating Transition State Searches with Machine Learning Potentials on Google Colaboratory

We have developed a rapid and automated transition state (TS) search method for chemical reactions by combining the double-ended method, Direct MaxFlux (DMF), with machine learning (ML) potentials. Compared to conventional quantum mechanical (QM) scan-based approaches, this method achieves approximately 2 orders of magnitude speedup, typically locating TS structures within 10 min. To promote broad accessibility, this method is implemented on Google Colaboratory (Colab), leveraging its cloud-based GPU environment to eliminate the need for local computational resources. We named this implementation as ColabReaction. A modified panel-based graphical user interface is also provided, allowing users to perform TS searches through a web-based interface without writing code. This platform offers a cost-free, user-friendly solution for reaction pathway exploration and mechanistic analysis, particularly for experimental researchers and students without prior experience in computational chemistry. ColabReaction is open-source and freely available at https://ColabReaction.net and https://github.com/BILAB/ColabReaction.

Authors

Institutions

Publication Details

Journal
Journal of Chemical Information and Modeling
Published
2025-10-28
DOI
https://doi.org/10.1021/acs.jcim.5c02398
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

ColabReaction: Accelerating Transition State Searches with Machine Learning Potentials on Google Colaboratory

Hiromitsu Nishizaki, Hideaki Yajima, Hajime Sato, Tohru Terada et al.
Journal of Chemical Information and Modeling
Machine Learning in Materials Science
article

ColabReaction: Accelerating Transition State Searches with Machine Learning Potentials on Google Colaboratory

Hiromitsu Nishizaki, Hideaki Yajima, Hajime Sato, Tohru Terada, Chee Siang Leow, S. Arai, Masayuki Karasawa
article en

Abstract

We have developed a rapid and automated transition state (TS) search method for chemical reactions by combining the double-ended method, Direct MaxFlux (DMF), with machine learning (ML) potentials. Compared to conventional quantum mechanical (QM) scan-based approaches, this method achieves approximately 2 orders of magnitude speedup, typically locating TS structures within 10 min. To promote broad accessibility, this method is implemented on Google Colaboratory (Colab), leveraging its cloud-based GPU environment to eliminate the need for local computational resources. We named this implementation as ColabReaction. A modified panel-based graphical user interface is also provided, allowing users to perform TS searches through a web-based interface without writing code. This platform offers a cost-free, user-friendly solution for reaction pathway exploration and mechanistic analysis, particularly for experimental researchers and students without prior experience in computational chemistry. ColabReaction is open-source and freely available at https://ColabReaction.net and https://github.com/BILAB/ColabReaction.

Journal of Chemical Information and ModelingVol. 65(21)
Takeda (Japan) (JP), University of Yamanashi (JP), The University of Tokyo (JP)
Openalex Percentile: Top 75%
Machine Learning in Materials Science
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

ColabReaction: Accelerating Transition State Searches with Machine Learning Potentials on Google Colaboratory — Hiromitsu Nishizaki, Hideaki Yajima, et al. · Journal of Chemical Information and Modeling (2025) | TGRS Research Map | TGRS