ColabReaction: Accelerating Transition State Searches with Machine Learning Potentials on Google Colaboratory
We have developed a rapid and automated transition state (TS) search method for chemical reactions by combining the double-ended method, Direct MaxFlux (DMF), with machine learning (ML) potentials. Compared to conventional quantum mechanical (QM) scan-based approaches, this method achieves approximately 2 orders of magnitude speedup, typically locating TS structures within 10 min. To promote broad accessibility, this method is implemented on Google Colaboratory (Colab), leveraging its cloud-based GPU environment to eliminate the need for local computational resources. We named this implementation as ColabReaction. A modified panel-based graphical user interface is also provided, allowing users to perform TS searches through a web-based interface without writing code. This platform offers a cost-free, user-friendly solution for reaction pathway exploration and mechanistic analysis, particularly for experimental researchers and students without prior experience in computational chemistry. ColabReaction is open-source and freely available at https://ColabReaction.net and https://github.com/BILAB/ColabReaction.
Authors
- Hiromitsu Nishizaki (ORCID: https://orcid.org/0000-0002-7717-8312)
- Hideaki Yajima
- Hajime Sato (ORCID: https://orcid.org/0000-0001-5185-096X)
- Tohru Terada (ORCID: https://orcid.org/0000-0002-7091-0646)
- Chee Siang Leow
- S. Arai
- Masayuki Karasawa
Institutions
- Takeda (Japan) (JP)
- University of Yamanashi (JP)
- The University of Tokyo (JP)
Publication Details
- Journal
- Journal of Chemical Information and Modeling
- Published
- 2025-10-28
- DOI
- https://doi.org/10.1021/acs.jcim.5c02398
- Primary Topic
- Machine Learning in Materials Science
- Type
- article
- Field-Weighted Citation Impact
- 0.00