More Accurate and Reliable Phenology Retrieval in Southwest China: Multi-Method Comparison and Uncertainty Analysis

Accurate phenological information is crucial for evaluating ecosystem dynamics and the carbon budget. As one of China’s largest terrestrial ecosystem carbon pools, Southwest China plays a significant role in achieving the “dual carbon” goals of carbon peaking and carbon neutrality. However, evergreen forests are widely distributed in this region, and phenology extraction based on vegetation indices has certain limitations, while SIF-based phenology extraction offers a viable alternative. This study first evaluated phenological results derived from three solar-induced chlorophyll fluorescence (SIF) datasets, six curve-fitting methods, and five phenological extraction thresholds at flux sites to determine the optimal threshold and SIF data for phenological indicator extraction. Secondly, uncertainties in phenological indicators obtained from the six fitting methods were quantified at the regional scale. Finally, based on the optimal phenological results, the spatiotemporal variations in phenology in Southwest China were systematically analyzed. Results show: (1) Optimal thresholds are 20% for the start of growing season (SOS) and 30% for the end of growing season (EOS), with GOSIF best for SOS and EOS, and CSIF for the peak of growing season (POS). (2) Cubic Smoothing Spline (CS) has the lowest uncertainty for SOS, while Savitzky–Golay Filter (SG) has the lowest for EOS and POS. (3) Phenology exhibits significant spatial heterogeneity, with SOS and POS generally showing an advancing trend, and EOS and length of growing season (LOS) showing a delaying (extending) trend. This study provides a reference for phenology extraction in regions with frequent cloud cover and widespread evergreen vegetation, supporting effective assessment of regional ecosystem dynamics and carbon balance.