Climate Refugia Could Disappear From Australia's Marine Protected Areas by 2040

Abstract Climate change manifests in the ocean as chronic stressors, including warming, acidification and deoxygenation, and as acute stressors such as marine heatwaves. While marine protected areas (MPAs) are often designed to mitigate local stressors such as fishing and mining, their design seldom considers climate change. Using the Australian marine estate as a case study, we use projections from 11 CMIP6 Earth System Models to assess the climate exposure of Australian waters, and implications for the MPA network. We find that, under scenarios that exceed 1.8°C of global surface warming this century, ocean climate is projected to surpass recent variability (1995–2014) from mid‐century. This results in the disappearance of climate analogs—where future ocean conditions remain within recent variability—and of climate refugia—regions with slowest rates of environmental change, most likely to retain biodiversity—by 2040. Australian MPAs and unprotected areas exhibit similar patterns of exposure to warming, acidification, deoxygenation, and marine heatwaves, suggesting that MPA placement with respect to future climate is no better than random. Despite potential re‐emergence of climate refugia after 2060 under lower‐emissions scenarios, continued emissions under current Nationally Determined Contributions (SSP2–4.5) risk ecosystem collapse from chronic and acute thermal stress across protected and unprotected waters. While cutting emissions can partially cap or delay climate impacts, even under lower‐emissions scenarios, effective conservation requires adaptive strategies that protect biodiversity in place and on the move.